Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1257 ATGTCTGATCTATCAAATTCAGATAACAGTGCTGAAATCAGTATGGAGAAATCCTTGAGGGAGAAGAAGAGAGATCTTAGCACAGATGAAGCAGAAGAAGATCTTCGTCGTGAAGCTCATTCCTCATCAGAGAGAGAAAGAAGGAAGAAGATGAGGCTCTACATGAGAGAACTTGAAGATTTGGTCCCTTCTCTTCATGATGTTAAGGCAGACAAGGCAACCATTGTTGAAGAAACCATGAAGTACATTAAAACCCTAGAAGACATTGTTGAGAAGTTGGAGAAAATGAAGAGAGAGAAACTCGAATCTGCCTCAAACACTGCTAATAATCCCACTGATGGATCTTCTTCCTCCATGGCCACTCCTGCGGGCACATCGGTCCTGCAAAACCCGATAGGGTTTAAGACTTGGATTTTTCCAAATGTGGTGGTGGGCATTTGTGGAGAAGAAGCTCAGTTTGGTGTGTTCTTTCCCAAGAACGAAGAACTCTTCAGTGCCATCTTTAGTGTTCTTCATAAGCATAAGATTAAGGTTTTGTCTGTCAACATCACATCTAATGATACTAAAAGCTCCTACAAGATTCGAACAATTTCGAATAAGCAGAATTCGGAGGATCAAGTTGCAGAGGAATTTTCATTTGAGGAAACATGCAAGGAAGCGGCAAGAGAGATATATCTTCTCTCTCCTATGTGA 693 0.4127 MSDLSNSDNSAEISMEKSLREKKRDLSTDEAEEDLRREAHSSSERERRKKMRLYMRELEDLVPSLHDVKADKATIVEETMKYIKTLEDIVEKLEKMKREKLESASNTANNPTDGSSSSMATPAGTSVLQNPIGFKTWIFPNVVVGICGEEAQFGVFFPKNEELFSAIFSVLHKHKIKVLSVNITSNDTKSSYKIRTISNKQNSEDQVAEEFSFEETCKEAAREIYLLSPM 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1257 230 MobiDBLite consensus disorder prediction 103 122 - -
Lele46g1257 230 SMART finulus 41 92 IPR011598 GO:0046983
Lele46g1257 230 MobiDBLite consensus disorder prediction 100 122 - -
Lele46g1257 230 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 86 IPR011598 GO:0046983
Lele46g1257 230 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 24 226 IPR044278 GO:0003700|GO:0006355|GO:0009960
Lele46g1257 230 CDD bHLH_AtbHLH_like 40 94 IPR045239 -
Lele46g1257 230 Coils Coil 76 106 - -
Lele46g1257 230 MobiDBLite consensus disorder prediction 1 48 - -
Lele46g1257 230 MobiDBLite consensus disorder prediction 14 48 - -
Lele46g1257 230 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 31 98 IPR036638 GO:0046983
Lele46g1257 230 Gene3D - 26 103 IPR036638 GO:0046983
Lele46g1257 230 Pfam Helix-loop-helix DNA-binding domain 36 87 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1257 Lele-ChrLele46 19972326 19973203 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1257 7 226 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 28.519 3.06e-23 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele46g1257 HLH 1.4e-10 No_clan