Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1255 ATGCATGGTAACAGAAGGACTATTGGGTCCTTTCCAGCGATTGTAAGTATGATACAGGAACCTAGTTCTAGTGGCCCTGATATAAATCAGCAGACTTCCTTGAATCACATGCAAAATCCAGTTGATGCTCGGTTGTCCGATTTTCTTGGATCCTCTGGTGAGACTGCATGTTTACGCACCAGTGGTCCTAATGTTCAGAACTTTGATGGATGGAATGCTGGTGAACCTAGTTCTAGTGTGAATCTTCACAGTCAAGTCAATAATGATGGGCTAAAAGCAGAACATGGTTGGTCTTCTTCATGTGGTGCTTCTACTGAGGATGTTCTCAGACCAGAAGAACGGCAATTTGATCCAAATAATGTAACTTTCCCTGGTAGCTCGAATACCAGCTTACGTGGAAATCAATCCAGACTTCAGCCTTTCTTCTTGCAAGGTTCCAGCTCCAATCATAGAACCCAGAATGCGGCTTTAAATATGGGTTCCATTGACAGCCCTGCTAATCATGGGAAAGGAACAGAACCTTGCAGCAGTGATAGTATTCACAATACATATGGATTCAATAATAAGCATACATCATTTGGTAGTGCTTCACATGATCATATAGGAACTTCATCTGGAAGCTCTGGTTACATTGTTGGCGGAGATAATGATAATTCAAGCTCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCTCTTGAAAGTACTTCTGGGCAGCTGTGTACTGGAGGAAGTTCAAGCTCTTTTCTAGAAGCTGAAAGCAGTTGCTGGCCTACTGGGACTCCCAATTCTAATATTTCTTCCGGTGGTTTAAATGCGTCTAGACCTTCTGAGGATATTTCTATTACTAATCCTCCAGTAGAGCAGAACCCAGGAAATGAGATGAGGCAAAGAGCTTCTGATGCATTCCCTTTGGTAGGGGTTATGGGAAATGTGAACAGGCCTCTGAGAAACTTTGATAGGAGGATGAATTATCCACAGCGACAGGAATCTAGGCATCCTAATCATTCTTCGTCACGCCAAACAGCTACCTCTCACCGATTTAATGATTCTCTAGAATTAAGGTTAACAGCCGGAGTTACAGCAACCAGTTCTAGTGCTCCTCAGTGTCAGTCACATGTCACACACATCCCTGGTTTGCCACGGAACACACGTCCCTTTCCTTGGAGTGGAGCTTCTAGTTCAAGAGGAGCCAGTTCATCTACTTCTTATAACTCTGCAGATAGAGAACTTCGGGAAGAATTGAACCTAAGAATTTTTCCAAGAGACAATACAGAGCACCCCATCCTTGCTCCTTCATCGTCTGGACTTGACCCTACAAGTTGGCATATGTCATCTGGCAATGGGAACAATTCTGGTAGTGTACCTCCTCCACCTTGGATTGGATCCAGCTCAAGTGTCAATGCATTACCTAATCCGAGCTGGATTGTTCCCCATGAAGTTCCAACGCAGAGCCAGCAAAGCTTATCAGAGTTCAGTCCCTGGTCCTTCTTTCCGTCAATGAACTCAGTATCTGGTGTTCATAATGTTCATTCTGCCTCATCTTCTACTTCTTCTGGTCCTCCTTCCTTTACTCCAGACGCTAGCAACCACCAGTCATATCCAAGATTAGCGTCATTGATGGAGAGAAGAGGCGATGAAGTTCTTAGCACACCCCATTCATTGCGGGCTTTAGCTGTTGACATTGAGGGGAGACGCCGATTGATATCTGAGATTCGCCAAGTCTTAAGTGCCATGCGTAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCATGTATCATGGTATGGCTGAACTGCATGATAGGCACAGGGACATGCGCCTTGATGTTGATAACATGTCTTACGAGGAATTGCTGGCATTGGAGGAGCGCATAGGAGATGTGAGCACCGGATTAAGCGAGGATACCATTATGAGGTTGATGAAACATCGGATCTACGTGTCTGTCATGACCGAGTCTTCTACATATCTGGAACCTTGTTGTGTTTGTCAGGAGCAATACGCTGATGGGGAAGATGTAGCCTCACTAGATTGTGGACATGAATTCCACACCAACTGCGTCAAGCAGTGGCTAATGCTGAAGAACCTGTGCCCCATTTGCAAAACAACGGCCTTAGCAACATGA 2142 0.4486 MHGNRRTIGSFPAIVSMIQEPSSSGPDINQQTSLNHMQNPVDARLSDFLGSSGETACLRTSGPNVQNFDGWNAGEPSSSVNLHSQVNNDGLKAEHGWSSSCGASTEDVLRPEERQFDPNNVTFPGSSNTSLRGNQSRLQPFFLQGSSSNHRTQNAALNMGSIDSPANHGKGTEPCSSDSIHNTYGFNNKHTSFGSASHDHIGTSSGSSGYIVGGDNDNSSSLVNWGSSCKRKALESTSGQLCTGGSSSSFLEAESSCWPTGTPNSNISSGGLNASRPSEDISITNPPVEQNPGNEMRQRASDAFPLVGVMGNVNRPLRNFDRRMNYPQRQESRHPNHSSSRQTATSHRFNDSLELRLTAGVTATSSSAPQCQSHVTHIPGLPRNTRPFPWSGASSSRGASSSTSYNSADRELREELNLRIFPRDNTEHPILAPSSSGLDPTSWHMSSGNGNNSGSVPPPPWIGSSSSVNALPNPSWIVPHEVPTQSQQSLSEFSPWSFFPSMNSVSGVHNVHSASSSTSSGPPSFTPDASNHQSYPRLASLMERRGDEVLSTPHSLRALAVDIEGRRRLISEIRQVLSAMRRGENLRAEDYMLFDPFMYHGMAELHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEDTIMRLMKHRIYVSVMTESSTYLEPCCVCQEQYADGEDVASLDCGHEFHTNCVKQWLMLKNLCPICKTTALAT 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1255 713 MobiDBLite consensus disorder prediction 326 347 - -
Lele46g1255 713 MobiDBLite consensus disorder prediction 363 409 - -
Lele46g1255 713 FunFam E3 ubiquitin-protein ligase MBR2 633 711 - -
Lele46g1255 713 SMART ring_2 666 706 IPR001841 -
Lele46g1255 713 MobiDBLite consensus disorder prediction 253 280 - -
Lele46g1255 713 MobiDBLite consensus disorder prediction 509 533 - -
Lele46g1255 713 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 225 711 IPR045191 GO:0061630
Lele46g1255 713 SUPERFAMILY RING/U-box 665 710 - -
Lele46g1255 713 MobiDBLite consensus disorder prediction 363 379 - -
Lele46g1255 713 MobiDBLite consensus disorder prediction 388 407 - -
Lele46g1255 713 MobiDBLite consensus disorder prediction 424 465 - -
Lele46g1255 713 Pfam Ring finger domain 666 707 IPR001841 -
Lele46g1255 713 MobiDBLite consensus disorder prediction 429 465 - -
Lele46g1255 713 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 711 IPR013083 -
Lele46g1255 713 ProSiteProfiles Zinc finger RING-type profile. 666 707 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1255 Lele-ChrLele46 19961422 19965283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1255 31 713 C3H Transcription Factor Family AT2G15530 36.606 1.80e-109 346