Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1247 ATGGCTCAGGTTCAGGTTCCACCTCAAAATGTGATGCCGGGAGCTAACGGTGCTCCTGCGACTGGCGGGGGAAACCAGTTCGTGCCGACGTCGCTCTATGTTGGAGATCTTGATGAGAACGTTACGGAATCGCAGCTCTATGATATGTTTAACCAAGCTGGTCAGGTTGTCACCGTTAGGGTGTGTAGGGATTTGACCAGCCGGCGATCACTTGGTTACGGTTATGTCAATTTTAGCTCGGCGCCAGAAGCTGCCAGAGCAATGGATTTGCTGAACTTCACTCCTCTTAATAACAAGCCCATCCGTATTATGTATTCGCATCGTGATCCCAGTATTCGAAGAAGTGGGGCCGGAAATATATTTATTAAGAATCTTGATAAGGCAATTGACCACAAAGCTTTGCATGATACCTTCTCTGCATTTGGGAATATCCTTTCTTGCAAAGTAGCTACAGATTCATCTGGCCAGTCAAAGGGATATGGCTTTGTGCAATTTGATAATGAGGAATCTGCTCAAAAGGCCATAGAGAAATTGAACGGTATGCTGTTGAATGATAAACAGGTGTATGTGGGACCCTTTCTTCGCAAGCAAGAGAGAGAAAGTGCTGTTGACAAAACAAAATTTAACAACGTTTTTGTAAAGAATTTATCTGAGACAACCACCGATGAAGATTTAAAGAGAATTTTTGGTGAATTTGGAACAATTACAAGTGCTGTAGTCATGAGAGACGCGGATGGCAAATCTAAGTGCTTTGGATTTGTGAACTTCGAGAATGCTGATGATGCTGCCAGGGCTGTTGATTCTCTTAATGGGAAGAAAATTGATGACAAGGAATTGTATGTTGGAAAAGCTCAAAAGAAATCCGAAAGGGAGCTTGAATTGAAACATCGATTTGAACAGAGCATGAAAGAAGCCGCTGATAAATATCAAGGGACTAACTTGTATGTTAAAAATTTAGATGATAGCATTAGCGATGATAAACTTGGGGAGCTCTTCTCTCCATTTGGGAACATTACCTCATGCAAGGTCATGAGAGACCCCAATGGGATAAGCCGAGGATCAGGGTTTGTTGCATTCACGACTCCTGAAGAGGCTTCAAGAGCTCTTTTGGAGATGAATGGGAAAACGGTAGTAAGCAAGCCTCTATATGTTGCTTTAGCTCAACGTAAAGAAGATAGAAGAGCTAGACTGCTGGCTCAGTTTGCTCAAATGCGGCCTGTTGCAATGGCACCATCTGTAGCTCCCCGTATGCCTATGTACCCCCCTGGTGGTCCAGGTATTGGACAACAAATATTTTATGGTCAAGGCCCTCCTGCCATCATTCCTTCCCAGCCGGGATTTGGGTATCAACAACAACTTGTACCTGGAATGAGGCCTGGAGGAGGTCCTATGCCAAATTTCTTTATGCCAATGGTTCAGCAAGGGCAGCATGGCCAGCGTCCAGGTGGAAGACGTGCAGGGGCAGTCCAGCAGAACCAGCAGCCTGTTCCACTAATGCAGCCGCAGATGCTTCCAAGGGGGCGTATGTACCGATATCCTCCTGGTAGGGGTCTGCCTGATGTTGGTGGAATGTCAATTCGTGATGCAGCTCTGCCCCAGCAAATTCCTATAGGGGCTCTGTCTTCTGCCCTGGCAAATGCTACTCCAGAGCAGCAGAGGACGGTAGGCATTTTTGTTGAGTTATTCTTTATGATGCTGGGTGAGAACCTTTACCCTCTCGTGGAACAGTTGGAGCCTGAAAACGCGGCAAAAGTGACAGGCATGCTTTTGGAGATGGACCAGACTGAGGTTCTGCACTTACTCGAATCCCCCGAGGCTTTGAAATCAAAGGTGGCTGAGGCGATGGATGTTCTGAGGAATGTTGCTCAGCAGCAGCAAGCCGGGGGAGCCGCGGATCAATTGGCCTCATTATCACTTAATGACAATCTTCCGGACGGGCATCTTGATGCAATCGCTGAATGTATTGGGGGACTGACTGACGTACAGAAATGCAAAACCATTTATGTGTAA 2010 0.4637 MAQVQVPPQNVMPGANGAPATGGGNQFVPTSLYVGDLDENVTESQLYDMFNQAGQVVTVRVCRDLTSRRSLGYGYVNFSSAPEAARAMDLLNFTPLNNKPIRIMYSHRDPSIRRSGAGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAVDKTKFNNVFVKNLSETTTDEDLKRIFGEFGTITSAVVMRDADGKSKCFGFVNFENADDAARAVDSLNGKKIDDKELYVGKAQKKSERELELKHRFEQSMKEAADKYQGTNLYVKNLDDSISDDKLGELFSPFGNITSCKVMRDPNGISRGSGFVAFTTPEEASRALLEMNGKTVVSKPLYVALAQRKEDRRARLLAQFAQMRPVAMAPSVAPRMPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGGGPMPNFFMPMVQQGQHGQRPGGRRAGAVQQNQQPVPLMQPQMLPRGRMYRYPPGRGLPDVGGMSIRDAALPQQIPIGALSSALANATPEQQRTVGIFVELFFMMLGENLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQQAGGAADQLASLSLNDNLPDGHLDAIAECIGGLTDVQKCKTIYV 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1247 669 Pfam Poly-adenylate binding protein, unique domain 564 618 IPR002004 GO:0003723
Lele46g1247 669 SUPERFAMILY PABC (PABP) domain 493 639 IPR036053 GO:0003723
Lele46g1247 669 Gene3D - 194 295 IPR012677 -
Lele46g1247 669 FunFam Polyadenylate-binding protein 16 118 - -
Lele46g1247 669 SMART rrm2_1 119 191 IPR003954 GO:0003676
Lele46g1247 669 SMART rrm2_1 313 385 IPR003954 GO:0003676
Lele46g1247 669 SMART rrm2_1 210 282 IPR003954 GO:0003676
Lele46g1247 669 CDD RRM1_I_PABPs 31 110 - -
Lele46g1247 669 CDD RRM3_I_PABPs 208 287 - -
Lele46g1247 669 FunFam Polyadenylate-binding protein 199 294 - -
Lele46g1247 669 Gene3D - 296 396 IPR012677 -
Lele46g1247 669 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 209 286 IPR000504 GO:0003723
Lele46g1247 669 FunFam Polyadenylate-binding protein 119 192 - -
Lele46g1247 669 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 546 623 IPR002004 GO:0003723
Lele46g1247 669 CDD RRM2_I_PABPs 116 192 IPR045305 -
Lele46g1247 669 CDD RRM4_I_PABPs 311 389 - -
Lele46g1247 669 FunFam Polyadenylate-binding protein 295 400 - -
Lele46g1247 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 102 IPR000504 GO:0003723
Lele46g1247 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 314 382 IPR000504 GO:0003723
Lele46g1247 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 279 IPR000504 GO:0003723
Lele46g1247 669 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 120 188 IPR000504 GO:0003723
Lele46g1247 669 MobiDBLite consensus disorder prediction 1 23 - -
Lele46g1247 669 Gene3D - 119 191 IPR012677 -
Lele46g1247 669 Gene3D - 531 625 - -
Lele46g1247 669 SUPERFAMILY RNA-binding domain, RBD 30 199 IPR035979 GO:0003676
Lele46g1247 669 SUPERFAMILY RNA-binding domain, RBD 209 393 IPR035979 GO:0003676
Lele46g1247 669 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 389 IPR000504 GO:0003723
Lele46g1247 669 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 31 619 IPR006515 GO:0003723
Lele46g1247 669 PANTHER RNA BINDING PROTEIN 30 92 - -
Lele46g1247 669 SMART poly_2 548 621 IPR002004 GO:0003723
Lele46g1247 669 SMART rrm1_1 210 282 IPR000504 GO:0003723
Lele46g1247 669 SMART rrm1_1 119 191 IPR000504 GO:0003723
Lele46g1247 669 SMART rrm1_1 313 385 IPR000504 GO:0003723
Lele46g1247 669 SMART rrm1_1 31 104 IPR000504 GO:0003723
Lele46g1247 669 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Lele46g1247 669 FunFam Polyadenylate-binding protein 532 624 - -
Lele46g1247 669 Gene3D - 25 118 IPR012677 -
Lele46g1247 669 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 118 190 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1247 Lele-ChrLele46 19918560 19923148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1247 1 640 Eukaryotic Initiation Factors Gene Family AT4G34110 71.981 0.0 896