Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1182 ATGGCTTTGGAGGCTCTGAATTCTCCTACTGTAACTCCCAATCCTATGTTCAAAGAAGATGACGATCTTCACTCGCTCGAGGCTTGGACCAAGGGCAAGCGATCTAAACGCCACCGTTTTGATCAGAATCCGCCTTCCGCTGATGAAGAGTACCTCGCTATCTGCCTACTCATGCTTGCTCACGGCGGCAACGCGAATCCAATTACGACGTCGTCTACGTCCCCTGATCCGATGAAGCTTTCTCACAAGTGCTCTGTCTGTAATAAGTCCTTCTCCTCCTACCAGGCGCTCGGAGGACACAAGGCCAGCCACCGCAAGTCCTCCTCCTCCGCCTCCGATCATCACTCTCCCGCAGATAATTCATCCGCCTCCGCCTCCACCGCCGCAGTCGCTGGCACCGGGAAGCTGCATCAGTGTTCAATCTGTCACAAGTCTTTCCCGACAGGTCAGGCCCTCGGCGGTCACAAGCGCTGCCACTATGACGGCGGCAACGCCAACAACAGTGGTACCGGTGGAACCACGGTGATCACATCGTCTGAGGGGAACACCTCATCGGTCACGCACACCAACCGCGGGTTTGACCTGAACCTGCCCGCGCCATTGAACGACTTCTCCCCGGTAGGTTTCGTCGCCGCCGCCACCGCCAAGAGTGTCAAGATCGGAGAAGAAGAGGTGGAGAGCCCATTACCGACTGCCGCCAACAAGAAGCCTCGTCTGTTCATGGACCAAGAATGA 735 0.5673 MALEALNSPTVTPNPMFKEDDDLHSLEAWTKGKRSKRHRFDQNPPSADEEYLAICLLMLAHGGNANPITTSSTSPDPMKLSHKCSVCNKSFSSYQALGGHKASHRKSSSSASDHHSPADNSSASASTAAVAGTGKLHQCSICHKSFPTGQALGGHKRCHYDGGNANNSGTGGTTVITSSEGNTSSVTHTNRGFDLNLPAPLNDFSPVGFVAAATAKSVKIGEEEVESPLPTAANKKPRLFMDQE 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1182 244 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Lele46g1182 244 SUPERFAMILY beta-beta-alpha zinc fingers 82 159 IPR036236 -
Lele46g1182 244 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Lele46g1182 244 MobiDBLite consensus disorder prediction 98 126 - -
Lele46g1182 244 MobiDBLite consensus disorder prediction 1 23 - -
Lele46g1182 244 MobiDBLite consensus disorder prediction 222 244 - -
Lele46g1182 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Lele46g1182 244 SMART c2h2final6 82 104 IPR013087 -
Lele46g1182 244 SMART c2h2final6 137 159 IPR013087 -
Lele46g1182 244 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 199 IPR044653 GO:0003700
Lele46g1182 244 Pfam C2H2-type zinc finger 82 106 - -
Lele46g1182 244 Pfam C2H2-type zinc finger 137 161 - -
Lele46g1182 244 Gene3D Classic Zinc Finger 80 159 - -
Lele46g1182 244 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1182 Lele-ChrLele46 19486958 19487692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1182 1 239 C2H2 Transcription Factor Family AT1G27730 48.606 3.53e-58 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele46g1182 zf-C2H2_6 1.2e-11 CL0361