Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1135 ATGTCGGCGAGCTCATCAAATGCAGGGGGAAGGAAAAGTAAGGGTCGCCAGAAGATTGAGATAAAGAAGATGGAGAACGAAAGCAACCTGCAAGTCACCTTCTCGAAGCGTCGTGCCGGCCTCTTCAAGAAGGCCAGTGAGCTTTGCACTCTCTGCGGCGCTGAGGTTGCCCTAATCGTCTTCTCTCCCGGCGAAAAGGCTTTCTCGTTCGGCCATCCCAGTGTTGATGCTGTTTTGGACCGTTACCTGAATGGCAGCGTGCCACCAATGCCTCCGTCAGCTTCCATGCAAATGATGGAGGCTCACCGGAGCGCTGCCGTCAATGAACTTAACGCTCATCTCAGTCATCTCGTGGAAGAGCTCGAGGTGGAGAAGAAGCACGGAGAGGAACTGGACAGGAGGTTGAAGGAGATGGAGACCAAGTTCGGGTTTGCTCAACCGATTCGTAATCTCAATAGGGATCAGCTAGGGATCTTGAAGAAGCGTATGGAGGATATGAAGAAGACTATGTGGTGCCGAGGTGAACAGTCTGGTATGTTCCACAATAAACCGTCTCAGTTCTACGTGGGTGGAGGCTCTTCCTCCGGCTGCCATGTGCCGCCACCTCCACAGCCTCAGCCACCACTACCAATGCCGAATATGGCAGCTCCACCACCTGCAGCAGCTCAGATGTTTCCTTCCCCTTTCCCGCAGCCAATCCTGCAGCAACCTCCTGTGCAACCTCAGATGATGACTCAGAATCCGACGATGTTCGAAGGGAACATGATGATGATGATGTCGCCGCCTCCCCCGCCACCTGCACCTGAAGGATTCCAGCAGTATCAGAACATGGGAGAGCAAAGTGGACCACCGGGATACTACTGA 864 0.5382 MSASSSNAGGRKSKGRQKIEIKKMENESNLQVTFSKRRAGLFKKASELCTLCGAEVALIVFSPGEKAFSFGHPSVDAVLDRYLNGSVPPMPPSASMQMMEAHRSAAVNELNAHLSHLVEELEVEKKHGEELDRRLKEMETKFGFAQPIRNLNRDQLGILKKRMEDMKKTMWCRGEQSGMFHNKPSQFYVGGGSSSGCHVPPPPQPQPPLPMPNMAAPPPAAAQMFPSPFPQPILQQPPVQPQMMTQNPTMFEGNMMMMMSPPPPPPAPEGFQQYQNMGEQSGPPGYY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1135 287 MobiDBLite consensus disorder prediction 1 24 - -
Lele46g1135 287 SUPERFAMILY SRF-like 15 88 IPR036879 GO:0003677|GO:0046983
Lele46g1135 287 FunFam Agamous-like MADS-box protein AGL62 26 90 - -
Lele46g1135 287 Coils Coil 121 141 - -
Lele46g1135 287 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 70 IPR002100 GO:0003677|GO:0046983
Lele46g1135 287 PRINTS MADS domain signature 16 36 IPR002100 GO:0003677|GO:0046983
Lele46g1135 287 PRINTS MADS domain signature 51 72 IPR002100 GO:0003677|GO:0046983
Lele46g1135 287 PRINTS MADS domain signature 36 51 IPR002100 GO:0003677|GO:0046983
Lele46g1135 287 ProSiteProfiles MADS-box domain profile. 14 74 IPR002100 GO:0003677|GO:0046983
Lele46g1135 287 MobiDBLite consensus disorder prediction 260 287 - -
Lele46g1135 287 PANTHER MADS BOX PROTEIN 16 170 - -
Lele46g1135 287 Gene3D - 26 89 IPR036879 GO:0003677|GO:0046983
Lele46g1135 287 CDD MADS_MEF2_like 15 86 IPR033896 GO:0000977|GO:0045944
Lele46g1135 287 SMART madsneu2 14 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1135 Lele-ChrLele46 19127788 19128651 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1135 11 201 Type I MADS-box Gene Family AT5G60440 49.505 2.15e-58 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele46g1135 SRF-TF 9.3e-25 No_clan