Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1130 ATGAAGAGAAAGTCCAGTTCAGGTCGCCAAAAGATCCCTATTGAGAAAATACCAAAGAAAAGCCATCTTCAAGTCACATTCTCAAAGCGTCGCTCAGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACTCTCTGCGGCGTTGAAATCGCCATCATCGTCTTCTCCCCGGCGGACAAGGCCTTCTCCTTCGGCCACCCGGAGGTGGAATCCATCATCGACCGCTATATCACCCGAAACCCTCCGTCGGAATCAGGGGCTCACCCTCTGGTGGAGGCTCACCGGAACGCGAATGTCCGGGAGCTGAACATGCAGCTGACACAGGTTCTTGGGCAACTGGAGATGGAGAGGAAGAGAGGAGAAGAGCTGGACCAGGTGAGGAAGGCGAGGCAGAGACAGTTCTGGTGGGAAAACCCTATTGAAGAATTAGGGTTTAATGAGTTGCAGCAACTTTTGGTTTCAATGGAGGAACTGAAGAAGGAGTTAGGGAAGATGGCGAACAAGATGTTGATGATGGAGCATAATAATAGTTTGACTGCAGCTGATTCTTCATCAGTTATTGTTGGAGGAAGAGCACAACATGGTGGATTTGGACGCTGTAATAATAATGGTGTTTGA 615 0.4959 MKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIIDRYITRNPPSESGAHPLVEAHRNANVRELNMQLTQVLGQLEMERKRGEELDQVRKARQRQFWWENPIEELGFNELQQLLVSMEELKKELGKMANKMLMMEHNNSLTAADSSSVIVGGRAQHGGFGRCNNNGV 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1130 204 CDD MADS_MEF2_like 8 75 IPR033896 GO:0000977|GO:0045944
Lele46g1130 204 SUPERFAMILY SRF-like 8 83 IPR036879 GO:0003677|GO:0046983
Lele46g1130 204 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Lele46g1130 204 Gene3D - 88 184 - -
Lele46g1130 204 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Lele46g1130 204 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Lele46g1130 204 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Lele46g1130 204 Coils Coil 147 174 - -
Lele46g1130 204 FunFam Agamous-like MADS-box protein AGL62 19 85 - -
Lele46g1130 204 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Lele46g1130 204 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Lele46g1130 204 Gene3D - 19 87 IPR036879 GO:0003677|GO:0046983
Lele46g1130 204 PANTHER MADS BOX PROTEIN 9 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1130 Lele-ChrLele46 19098909 19099523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1130 4 197 Type I MADS-box Gene Family AT5G60440 48.223 8.73e-57 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele46g1130 SRF-TF 2.4e-23 No_clan