Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1114 ATGAATTATGGGTCTGAGTCGTTGGGAACTGAACCAAAAATGGAGTCAGAGAAAAAATCAGTTTCAGAGAACGCAGCTGAGAAATCTGAAAGCTTTGTGATAGAAATGGAAGCCTTTTCTTCCGCCAACATCAACAAAGATAGAAATTCAAATTCCAGAATCACTGTGCAGAGGAGTGTTTCGAGGAAAGGGTGGAGCGGCAAGAAGGTTAATGTCCCTGCGGCTTCCTCTCCCCCAACTAAAGGGTGTTGTGTGGCCGGCCCGCCGGAAAAGGTGGTGGCTCCGGCAGTCGGCAGCCCACGGGTTCATCATCAGATTACAGTCACGACGGGCACCATGATGGGTCAAGCCAGAAGCATAGCTCGCAGACGCCCTTCTAATAATTCGGGCCTTGATGCCGACAAGATTTTTATTTTCTGTGCCACTTTTGTCTCTGTCTTAGGAAAAGAATCTTCATTGGATATTATGAATGGAAAAGGACGACATCCTCTAGCCCCTTCTCTCTTCGCATTTCAATTTCCTCTACGTTTCTTCTCTGAGAAAGCCTTCCAAAACTCCTTCAAGATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGAGCTCCGACACCATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAGCAGAGGCTGATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGTACCCTGGCTGACTACAACATCCAAAAGGAATCCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTCAAGACTCTCACCGGCAAGACCATAACCTTGGAGGTTGAGAGCTCTGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCCGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTCGCCGACTACAACATCCAAAAGGAATCCACCCTCCACCTTGTGCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTCAAGACTCTCACAGGGAAGACCATCACCTTGGAGGTTGAGAGCTCAGACACCATTGACAACGTTAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAACAGAGGCTCATCTTCGCCGGTAAGCAGCTTGAGGATGGCCGAACCTTGGCTGATTATAACATCCAGAAGGAGTCAACCCTCCACCTTGTCTTGCGTCTCCGTGGTGGTATGCAGATATTCGTGAAGACCCTCACAGGGAAGACCATTACTCTCGAGGTTGAGAGCTCAGACACCATTGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGTATCCCACCAGACCAGCAAAGGTTGATATTCGCTGGAAAGCAGCTCGAAGATGGACGTACACTTGCAGACTACAACATTCAGAAGGAATCCACCCTTCACCTTGTCCTTCGTCTCAGGGGAGGCATGCAGATTTTTGTCAAGACCTTGACTGGCAAGACCATCACTTTGGAGGTGGAGAGCTCGGACACTATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAGCAGAGGCTTATCTTTGCAGGGAAGCAACTTGAAGATGGAAGGACCCTTGCTGATTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTGCTTCGCCTCCGTGGTGGCAACTGA 1710 0.5094 MNYGSESLGTEPKMESEKKSVSENAAEKSESFVIEMEAFSSANINKDRNSNSRITVQRSVSRKGWSGKKVNVPAASSPPTKGCCVAGPPEKVVAPAVGSPRVHHQITVTTGTMMGQARSIARRRPSNNSGLDADKIFIFCATFVSVLGKESSLDIMNGKGRHPLAPSLFAFQFPLRFFSEKAFQNSFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGN 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1114 569 ProSiteProfiles Ubiquitin domain profile. 189 264 IPR000626 GO:0005515
Lele46g1114 569 CDD Ubl_ubiquitin 417 492 - -
Lele46g1114 569 ProSiteProfiles Ubiquitin domain profile. 265 340 IPR000626 GO:0005515
Lele46g1114 569 ProSiteProfiles Ubiquitin domain profile. 341 416 IPR000626 GO:0005515
Lele46g1114 569 ProSiteProfiles Ubiquitin domain profile. 417 492 IPR000626 GO:0005515
Lele46g1114 569 ProSiteProfiles Ubiquitin domain profile. 493 568 IPR000626 GO:0005515
Lele46g1114 569 FunFam Polyubiquitin 3 265 340 - -
Lele46g1114 569 ProSitePatterns Ubiquitin domain signature. 215 240 IPR019954 -
Lele46g1114 569 FunFam Polyubiquitin 3 341 416 - -
Lele46g1114 569 CDD Ubl_ubiquitin 341 416 - -
Lele46g1114 569 MobiDBLite consensus disorder prediction 54 82 - -
Lele46g1114 569 ProSitePatterns Ubiquitin domain signature. 443 468 IPR019954 -
Lele46g1114 569 SUPERFAMILY Ubiquitin-like 340 416 IPR029071 -
Lele46g1114 569 MobiDBLite consensus disorder prediction 11 25 - -
Lele46g1114 569 CDD Ubl_ubiquitin 189 264 - -
Lele46g1114 569 Gene3D - 341 417 - -
Lele46g1114 569 Gene3D - 265 340 - -
Lele46g1114 569 Gene3D - 418 492 - -
Lele46g1114 569 Gene3D - 182 264 - -
Lele46g1114 569 Gene3D - 493 569 - -
Lele46g1114 569 CDD Ubl_ubiquitin 493 568 - -
Lele46g1114 569 FunFam Polyubiquitin 3 417 492 - -
Lele46g1114 569 ProSitePatterns Ubiquitin domain signature. 519 544 IPR019954 -
Lele46g1114 569 ProSitePatterns Ubiquitin domain signature. 291 316 IPR019954 -
Lele46g1114 569 SUPERFAMILY Ubiquitin-like 187 264 IPR029071 -
Lele46g1114 569 MobiDBLite consensus disorder prediction 1 27 - -
Lele46g1114 569 PRINTS Ubiquitin signature 241 262 IPR019956 -
Lele46g1114 569 PRINTS Ubiquitin signature 220 240 IPR019956 -
Lele46g1114 569 PRINTS Ubiquitin signature 199 219 IPR019956 -
Lele46g1114 569 SMART ubq_7 265 336 IPR000626 GO:0005515
Lele46g1114 569 SMART ubq_7 341 412 IPR000626 GO:0005515
Lele46g1114 569 SMART ubq_7 417 488 IPR000626 GO:0005515
Lele46g1114 569 SMART ubq_7 493 564 IPR000626 GO:0005515
Lele46g1114 569 SMART ubq_7 189 260 IPR000626 GO:0005515
Lele46g1114 569 FunFam Polyubiquitin 3 493 568 - -
Lele46g1114 569 Pfam Ubiquitin family 191 262 IPR000626 GO:0005515
Lele46g1114 569 Pfam Ubiquitin family 495 566 IPR000626 GO:0005515
Lele46g1114 569 Pfam Ubiquitin family 343 414 IPR000626 GO:0005515
Lele46g1114 569 Pfam Ubiquitin family 419 490 IPR000626 GO:0005515
Lele46g1114 569 Pfam Ubiquitin family 267 338 IPR000626 GO:0005515
Lele46g1114 569 ProSitePatterns Ubiquitin domain signature. 367 392 IPR019954 -
Lele46g1114 569 PANTHER UBIQUITIN 341 418 - -
Lele46g1114 569 CDD Ubl_ubiquitin 265 340 - -
Lele46g1114 569 SUPERFAMILY Ubiquitin-like 416 492 IPR029071 -
Lele46g1114 569 SUPERFAMILY Ubiquitin-like 264 340 IPR029071 -
Lele46g1114 569 SUPERFAMILY Ubiquitin-like 492 568 IPR029071 -
Lele46g1114 569 FunFam Polyubiquitin 3 189 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1114 Lele-ChrLele46 18958135 18968477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1114 493 568 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 3.88e-46 156