Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1108 ATGGACTCTCAAAGGCTGTTACTTTCCCGAGAAAACCCTAGGCCCCTGGGTTTCCCTACTGGGCGAGTACTCCCTTCTGTCACTGCAAAATCCATGCCCGCTGAGATGGCTCAGAAGCCAGTTCCTCCTGCGATATTGGAACGGTTCAAGGCTCTGCTCAAGCGGCGCGACGATGAACGGAGGGCTGTGTCGGACGACGATGCGCCACCGCCGTCCACTGAGGATATTGTGCGGCTTTACGAGATAGTCTTGTCTGAGCTTACTTTAAATTCGAAGCCCATCATCACCGAACTTACCATCATTGCGGGAGACCAGAAGGAGCATGGGAAGGGTATAGCTGATGCAATTTGTGATCGAATTCTTGAGGTGCCTTTGGAGAAAAAGCTTCCTTCACTATATCTTTTAGACAGTATTGTGAAGAATATTGGTGGGGAGTATGTTAGATACTTCTCCTCACGTCTTCCTGAAGTGTTCTGTGTAGCATATCGGCAAGTTCAGCCTAATTTACATCAAGCAATGCGCCATCTCTTTGGTACCTGGTCAACAGTCTTTCCAGCTTCTGTTCTTCGCAAGATTGAAGCGCAGCTGCATTTTTCTCAAGCAGTTAATAATCAGAATATGTCATCTAGCATTAATCCCCCTAGGGTGTCTGAAGCTACACAGCGATCTCACGGAATTCATGTTAATCCAAAATACTTGCGACAGTTGGAAAGCTCAACCATGGACACTGATGGGGGTGAAATGCTGGATTCGACAAGAAGCGTGGGACATACAAATTTTGGCCTTGGAACTGATAAGATGCATCAGGCTTCAATTAGCAGGCATGGAAAACATTATCCTGGTGATGGTCGGAATCAATTCCAATTTTCTACAAATGGACATCAGCGCCAAAGTCCAAGAGCTCTTATTGATGCCTATGGCAGTGACAAAAGGGTGGAAACTTCAAGCAATAAGCTTTTGGTTGAACCGCTTGACATAAACGGTATGGACAACAAGGTGGTGTCAACGCCATGGCAGAATACTGAAGAGGAAGAGTTTAATTGGGAAGATATGAGTCCAACATTAGTGGAGCATAAGAGAAGTAATGGTATCTTACCGTCATCAATTATTTTGTCTAGGGAGAGATCTGGTGGTATTGCTGCAGATAATGCGGCTGCTTTGGGTCAAGATGCCAGAAGTGGTTGGGTTAATCAATCTCTGCTTCCTCCCATGAATGATCCTTCTATCATAGCAGAAGATGCATTTGTGCGTTCGGGTAATGGTGGTGGATCATTGGGTCTGGTCTCCCATCCTCCTCCTGATGCCTGGAAGATTTCTCATCATTTGTCTAATTCTACACAACACATTAATATTAGAGGTCAAGCAAGGAATGCTCACCTGTCTCCTAGTGATAGCATTCCAATTACTAAAGTAAACTCGTATGGGCTTGAGGCTCGTCCGCCGGCTTTACCTGCATCTTTTCGAACTAGGCCCCCTGTAAATGTGCATGCTAGTCGTCCACCCTCCTTAAATCCTATTTTTTCATTGCAGAAACATGCTAGGAACCAATTTGAAGGAATAAATAGTAGTAACACCATTTTAGATCAAGGCCCCACTAAATCTTCATTCATACCTGAACAGCTATTGGACAGTGGTGAGAACAATAATATTGGTAAATTAACAATTCCTCAGATTCCTAATCAGCTATCCGGGCTAATTTCATCAAACCCGTATAACCGTGGACAAGCATTACAACCTCAAAATTTTCCACCTCAGGATATGCGAGAAAGTTTTGCTGGAGCGCAAGCTCCAGCAGCTTCTCAATTTAGTCATGGGCGCCCTTTGCAAAGACACGGTGCTGCTATCAGTGCAACTGTGTCCATGTCATTACCTATTGGACAGTTTCCTTTACCAGTACAAAACATGGCAAACAACACGTTTCCTATACAGCAGGGAGCCTTGCGTCCATTTCCAGCTCATCGTCCTCCATCGCAAGTGATGCCTCGGACAAATGATAGTCCATATACCTCGGGCCAACAGCCAGCTGGTGCATTTTCTGGTCTGATCAATTCACTTATGGCACAAGGTTTGATCTCATTGACTGGACAACCCCCTGCACAGGATTCTGTTGGAACTGAATTTAATCCTGATGTTCTGAAGATCCGGCATGAGTCTGCAATTAGTGCTTTATATTCTGATCTCCCTCGACAATGCACTACTTGTGGCCTTCGATTCAAGAGTCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAAATCGTAAGCAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGAGAGAATGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAAGCTGTACCTGGTTTTTTGCCAACTGAGACCATGGAGGAAGATAAAGAAGATGAAGAGATGGCTGTGCCGGCTGATGAAGACCAGAATACATGTGCGTTATGTGGAGAGCCTTTTGAAGAGTTTTATAGCGATGAAACTGAGGAATGGATGTATAGAGGAGCTGTATACCTGAATGTGCCCAAGGGAACAGTTCCAGACATGGATAGGTTGCAGTTAGGTCCAATCGTTCATGCTAAATGCAGAACTGAGTCTAGTGCTGTCCCCACTGAAGAATTTAGACAGGATGATGTGGGCGCTGATGAAGAGGGTAGTCAAAGAAAACGAATGCGGAGTTAA 2694 0.451 MDSQRLLLSRENPRPLGFPTGRVLPSVTAKSMPAEMAQKPVPPAILERFKALLKRRDDERRAVSDDDAPPPSTEDIVRLYEIVLSELTLNSKPIITELTIIAGDQKEHGKGIADAICDRILEVPLEKKLPSLYLLDSIVKNIGGEYVRYFSSRLPEVFCVAYRQVQPNLHQAMRHLFGTWSTVFPASVLRKIEAQLHFSQAVNNQNMSSSINPPRVSEATQRSHGIHVNPKYLRQLESSTMDTDGGEMLDSTRSVGHTNFGLGTDKMHQASISRHGKHYPGDGRNQFQFSTNGHQRQSPRALIDAYGSDKRVETSSNKLLVEPLDINGMDNKVVSTPWQNTEEEEFNWEDMSPTLVEHKRSNGILPSSIILSRERSGGIAADNAAALGQDARSGWVNQSLLPPMNDPSIIAEDAFVRSGNGGGSLGLVSHPPPDAWKISHHLSNSTQHINIRGQARNAHLSPSDSIPITKVNSYGLEARPPALPASFRTRPPVNVHASRPPSLNPIFSLQKHARNQFEGINSSNTILDQGPTKSSFIPEQLLDSGENNNIGKLTIPQIPNQLSGLISSNPYNRGQALQPQNFPPQDMRESFAGAQAPAASQFSHGRPLQRHGAAISATVSMSLPIGQFPLPVQNMANNTFPIQQGALRPFPAHRPPSQVMPRTNDSPYTSGQQPAGAFSGLINSLMAQGLISLTGQPPAQDSVGTEFNPDVLKIRHESAISALYSDLPRQCTTCGLRFKSQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTEAVPGFLPTETMEEDKEDEEMAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNVPKGTVPDMDRLQLGPIVHAKCRTESSAVPTEEFRQDDVGADEEGSQRKRMRS 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1108 897 Gene3D - 68 197 IPR008942 -
Lele46g1108 897 SUPERFAMILY ENTH/VHS domain 71 202 IPR008942 -
Lele46g1108 897 MobiDBLite consensus disorder prediction 870 897 - -
Lele46g1108 897 Pfam CID domain 89 190 IPR006569 -
Lele46g1108 897 ProSiteProfiles CID domain profile. 72 200 IPR006569 -
Lele46g1108 897 MobiDBLite consensus disorder prediction 868 897 - -
Lele46g1108 897 MobiDBLite consensus disorder prediction 1 23 - -
Lele46g1108 897 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 61 881 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lele46g1108 897 SMART 558neu5 75 197 IPR006569 -
Lele46g1108 897 CDD CID_Pcf11 77 197 - -
Lele46g1108 897 FunFam polyadenylation and cleavage factor homolog 4 69 197 - -
Lele46g1108 897 ProSitePatterns Zinc finger C2H2 type domain signature. 731 751 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1108 Lele-ChrLele46 18928223 18935192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1108 670 897 C2H2 Transcription Factor Family AT4G04885 73.684 4.35e-109 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele46g1108 CID 1.2e-10 CL0020