Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele46g1100 | ATGCAGCCTGGACCTGGCATGGCTCCCCCAAACATGGGTCAACAACCTACCCAGCAATACCAGCAGCAACAACCCTACATGATGATGCCACCGCAGGCTCAGGCGCCACCTATGTGGGCTCCATCTGCCCAGCCCCCGCCGCCGCAGCAGGCTGTTGCTCCGCCGCAACCCACGCAACACCTCCAGCCGAGTAGCGCCGATGAGGTCCGTACCCTTTGGATCGGCGATTTGCAGTACTGGATGGATGAAAACTATCTTTATAATTGTTTTGCGCATACCGGCGAGGTGGCTTCTGTAAAGGTCATTCGGAATAAGCAAACTAATTCATCGGAAGGTTATGGGTTTATTGAGTTTTTCACTCGTGCTGCTGCAGAGAGAATTCTTCAAACATTTAATGGCACAATTATGCCTAATGGTGGGCAAAACTTTAGATTGAATTGGGCAACCTTTAGTTCGGGTGATAGGCGTCATGATGATTCTCCAGATTACACAATTTTTGTTGGAGACTTGGCTGCCGATGTCACAGATTACCTGCTGCAGGAGACCTTTAGGGCCAGCTATCCCTCAGTTAAGGGTGCAAAAGTGGTAATTGATAGGCTCACTGGGCGGACGAAGGGTTATGGTTTTGTCAAGTTTGGAGATGAGAATGAACAGATACAAGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGCGAATCGGACCAGCCACAAACAAAAATGTTGGAGGACAGCAAAAAGCTTCCTATCAGAATCCTCAAGGGTCACAGAACGAGAATGATCCAAATAATACAACTATTTTCGTTGGCAATTTGGATCCTAATGTTACAGATGATCATTTAAGGCAAGTTTTCAGCCAGTACGGAGAATTGATACATGTGAAGATTCCAGCAGGCAAGAGATGTGGATTTGTCCAATTTGCCGATAGGAGCTGTGCTGAAGAGGCTCTGCGTATGCTAAATGGATCAGTGTTGGGCGGACAAAATGTCCGTCTTTCATGGGGCCGCAGTCCATCAAACAAACAGGCTCAGCCAGATCCAAGCCAGTATGGAGGATATTATGGGTATGCTCAAGGGTATGAGAATTACGGATACCCTCCTGCTGCTACGCAGGATCCCAACATGTATGGAAGCTATCCAGGTTATGCTAACTACCAACCACCACAGCAACAACAGCAAATGGGGTATAGCTAA | 1203 | 0.478 | MQPGPGMAPPNMGQQPTQQYQQQQPYMMMPPQAQAPPMWAPSAQPPPPQQAVAPPQPTQHLQPSSADEVRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTNSSEGYGFIEFFTRAAAERILQTFNGTIMPNGGQNFRLNWATFSSGDRRHDDSPDYTIFVGDLAADVTDYLLQETFRASYPSVKGAKVVIDRLTGRTKGYGFVKFGDENEQIQAMTEMQGVLCSTRPMRIGPATNKNVGGQQKASYQNPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFSQYGELIHVKIPAGKRCGFVQFADRSCAEEALRMLNGSVLGGQNVRLSWGRSPSNKQAQPDPSQYGGYYGYAQGYENYGYPPAATQDPNMYGSYPGYANYQPPQQQQQMGYS | 400 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele46g1100 | 400 | MobiDBLite | consensus disorder prediction | 1 | 64 | - | - | |
| Lele46g1100 | 400 | SUPERFAMILY | RNA-binding domain, RBD | 45 | 149 | IPR035979 | GO:0003676 | |
| Lele46g1100 | 400 | MobiDBLite | consensus disorder prediction | 30 | 54 | - | - | |
| Lele46g1100 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 70 | 150 | IPR000504 | GO:0003723 | |
| Lele46g1100 | 400 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 60 | 353 | - | - | |
| Lele46g1100 | 400 | CDD | RRM1_SECp43_like | 71 | 151 | - | - | |
| Lele46g1100 | 400 | CDD | RRM2_SECp43_like | 162 | 241 | - | - | |
| Lele46g1100 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 163 | 242 | IPR000504 | GO:0003723 | |
| Lele46g1100 | 400 | SMART | rrm1_1 | 71 | 146 | IPR000504 | GO:0003723 | |
| Lele46g1100 | 400 | SMART | rrm1_1 | 164 | 238 | IPR000504 | GO:0003723 | |
| Lele46g1100 | 400 | SMART | rrm1_1 | 269 | 336 | IPR000504 | GO:0003723 | |
| Lele46g1100 | 400 | Gene3D | - | 244 | 349 | IPR012677 | - | |
| Lele46g1100 | 400 | Gene3D | - | 7 | 157 | IPR012677 | - | |
| Lele46g1100 | 400 | MobiDBLite | consensus disorder prediction | 11 | 29 | - | - | |
| Lele46g1100 | 400 | FunFam | Polyadenylate-binding protein RBP45C | 247 | 350 | - | - | |
| Lele46g1100 | 400 | MobiDBLite | consensus disorder prediction | 386 | 400 | - | - | |
| Lele46g1100 | 400 | Gene3D | - | 162 | 238 | IPR012677 | - | |
| Lele46g1100 | 400 | CDD | RRM3_NGR1_NAM8_like | 267 | 338 | - | - | |
| Lele46g1100 | 400 | MobiDBLite | consensus disorder prediction | 236 | 267 | - | - | |
| Lele46g1100 | 400 | MobiDBLite | consensus disorder prediction | 379 | 400 | - | - | |
| Lele46g1100 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 270 | 333 | IPR000504 | GO:0003723 | |
| Lele46g1100 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 72 | 137 | IPR000504 | GO:0003723 | |
| Lele46g1100 | 400 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 165 | 228 | IPR000504 | GO:0003723 | |
| Lele46g1100 | 400 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 268 | 340 | IPR000504 | GO:0003723 | |
| Lele46g1100 | 400 | MobiDBLite | consensus disorder prediction | 242 | 267 | - | - | |
| Lele46g1100 | 400 | FunFam | Polyadenylate-binding protein RBP45C | 155 | 246 | - | - | |
| Lele46g1100 | 400 | FunFam | Polyadenylate-binding protein RBP45 | 9 | 154 | - | - | |
| Lele46g1100 | 400 | SUPERFAMILY | RNA-binding domain, RBD | 253 | 366 | IPR035979 | GO:0003676 | |
| Lele46g1100 | 400 | SUPERFAMILY | RNA-binding domain, RBD | 154 | 258 | IPR035979 | GO:0003676 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele46g1100 | Lele-ChrLele46 | 18875713 | 18879261 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele46g1100 | 164 | 333 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 28.571 | 2.03e-14 | 73.2 |