LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele46g1063	ATGGACTGGTCTAGGGGTGCCACCGTCGGCCGGGGTGCCACCGCCACCGTCTCAATTGCCCATGATCGCCGGTCCGGTCATTTGTTCGCGGTCAAGTCTGCTGAGCTCGACCGATCGGAGTTGCTTCAGAGGGAACAGAGGATTCTGTCCACATTGAAATCTCCTCACATTGTAGCATACCATGGTTATGATGTTACATTAGAGAATAATGCAGAATGGTACAATCTGATCATGGAGTATGCGCCTTATGGTACGATTGCCGACATGGCTCGCCGGCGAGATGGGCTAGAAGAAGCGGTGGTTCGAACCTATGCGCGCCAAATCTTGCTGGGGCTCAACCATCTTCATTCTAATGGAATTGTGCATTGTGATATTAAAGGTAAGAATGTTTTGGTGACGGAGGAAGGGGCGAAAATTGCAGACTTGGGTTGTGCTAGGAGGGTGTCTGAGGCGGCGGGTGACGGCGGAATGGTTGCCGGCACACCAATGTTCATGGCGCCGGAGGTGGCTCGTGGGGATCAACAGGGGTTCGCTGCCGACGTGTGGTCTCTGGGGTGTAGTGTATTGGAGATGATCACCGGGCGGGCTCCCTGGCCGGACGTATCTGACCCGGTAAGTGCGGTTTATCGAATCGGGTTCTCGAGGGATGTGCCGGAGATTCCCCGGTTCATGTCGGAGAAAGGGAGGGACTTTCTGAGCAAGTGTCTGACGAGAGACCCGATTGAGCGGTGGTCGGTGGGCGAACTCCTCAGACACGAGTTCCTGGAAGAATCAATTTCATCCATGAAAGAATTTGGAAGCTTGGATACTCCAACGGGTGTAATGGACGGATCCATTTGGGATTCGTGGGAGCCCACAGAAGATCCGACCCGTGTTCGTTCCTGCAATTCTGGCAGAGACAGGATTCGTCAGTTGTGCACAGAAGCTACGACGTCGTTTGAGGGTAATGAGGCCAACTGGGAATGGGAAGAAGAGTGGATCACAGTGAGAAGTAGCAACGGGACAAAAGAGAATTACAATGTTGACCTTGGAAATGAGAGAAATTTGGGGCGTTGTTATGAACCCAAAACGCTAATTAACGTTGGGTTGTGTGGTCACAGTTCTGGACTTTTGGCAATACCTGAATTAGAGGCCTTGGAGATTCTTGATTCTTTGTCCCCAGAAACTTTAGATCCAACAAAGGAGAGTTTGAGTGAACACAAGTTGGACTCACAAGCTCTCTGGCATGCATTTAATGAACTACCTTCCATTGCCTTTCTCCTGCTATGGGGTCTCTCTGTATTCATTGCAGCTTCTCCATCTTTTCTTTGCATTCTCAGGTGCTCCTTTCACTTTGATCTGGTGAAGACAGAGTTCTTACATCACATAGGAGGGAACTACATGTATGCTCCTTGGATTTCTTTACTTCTCATTCTTCAATCTGCGCCCATCAATGTTCCTAGATTTTTCTATCAGGTTCTATGCTGGACACTTTCAGTTCCAATATTGGTGCTGGATGTCAAACTCTATGGACAGTGGTTTACAACTGATAAACGGTTTCTGTCGGTGGTAGCAAACCCGGTAAGCCAGATGTTAGTGATAGAAAACTTAGTGGCTGCTCAAGTCATGGCAGAGATGGATTGGAAAGAGAGTGCAGTCTCAATGTTCTCACTTGGATTTGCACATTATCTGATTCTGTTTGTAACACTGTATCAGCATCTAACCAGTAGCAATCGGTTTCCCACAGTGCTGAGGCCAGCTTACTTTCTGTTCTTTGCGGCTCCAAGCTTGGCAAGTCTAGCTTGGAAGTCCATCTCAGGGTTTTTTGACACCCCATCAAGGATGCTATTGTTTCTGTCTGTTTCTCTGTGTCTCTGGCCAGCTCTCTTCAAGAAATCAATGAGAAGGTTGACTGTTACATGGTGGGTTTACTCATTCCCTTTAACCTTCATTGGTCTAGCCTCTGTTGAATATGCTCTTCAGGTAAAAGGCAATTTGGCAAAACACCTTCATAACAGCATACATGGAGAGGCCATTCCTGCCTGA	2025	0.4835	MDWSRGATVGRGATATVSIAHDRRSGHLFAVKSAELDRSELLQREQRILSTLKSPHIVAYHGYDVTLENNAEWYNLIMEYAPYGTIADMARRRDGLEEAVVRTYARQILLGLNHLHSNGIVHCDIKGKNVLVTEEGAKIADLGCARRVSEAAGDGGMVAGTPMFMAPEVARGDQQGFAADVWSLGCSVLEMITGRAPWPDVSDPVSAVYRIGFSRDVPEIPRFMSEKGRDFLSKCLTRDPIERWSVGELLRHEFLEESISSMKEFGSLDTPTGVMDGSIWDSWEPTEDPTRVRSCNSGRDRIRQLCTEATTSFEGNEANWEWEEEWITVRSSNGTKENYNVDLGNERNLGRCYEPKTLINVGLCGHSSGLLAIPELEALEILDSLSPETLDPTKESLSEHKLDSQALWHAFNELPSIAFLLLWGLSVFIAASPSFLCILRCSFHFDLVKTEFLHHIGGNYMYAPWISLLLILQSAPINVPRFFYQVLCWTLSVPILVLDVKLYGQWFTTDKRFLSVVANPVSQMLVIENLVAAQVMAEMDWKESAVSMFSLGFAHYLILFVTLYQHLTSSNRFPTVLRPAYFLFFAAPSLASLAWKSISGFFDTPSRMLLFLSVSLCLWPALFKKSMRRLTVTWWVYSFPLTFIGLASVEYALQVKGNLAKHLHNSIHGEAIPA	674

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele46g1063	674	Pfam	Protein kinase domain	5	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele46g1063	674	Pfam	Voltage-dependent anion channel	412	654	IPR004695	GO:0016020\|GO:0055085
	Lele46g1063	674	ProSitePatterns	Protein kinases ATP-binding region signature.	9	32	IPR017441	GO:0005524
	Lele46g1063	674	Gene3D	-	404	666	IPR038665	-
	Lele46g1063	674	SMART	serkin_6	3	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele46g1063	674	ProSiteProfiles	Protein kinase domain profile.	3	255	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele46g1063	674	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	120	132	IPR008271	GO:0004672\|GO:0006468
	Lele46g1063	674	SUPERFAMILY	Protein kinase-like (PK-like)	3	301	IPR011009	-
	Lele46g1063	674	Gene3D	Transferase(Phosphotransferase) domain 1	2	282	-	-
	Lele46g1063	674	CDD	STKc_MAPKKK	2	255	-	-
	Lele46g1063	674	PANTHER	CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED	3	337	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele46g1063	Lele-ChrLele46	18589283	18595660	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele46g1063	1	358	MAP Kinase Kinase Kinase	AT5G55090	44.709	1.48e-95	302

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Lele46g1063		SLAC1	1.8e-25	No_clan