Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g1019 ATGGCATCGGCTTCTCCTTCTCCCAATTCTTCTCCCTCTGCAGTGCCACCAACCTCTTCGAATAATACAATACCACCACCTTCTTCACCTTCTTTATCTACAAACTCTTCTAAGACCCCTCCTCCTCCACCTCCATCTCCTACTAACCCTTCAGCTCCACCTCCTGCTCAGGCAGTGCCTTCAACTCCGCCACCTTCTCCGTCTCTTTCGCCTCCGCTGCCATCGCCACCTGCAGCTGCCATAGCCCCTGCTCCAAATTCAACCTCACCAACCCCTCCTAGTTTATCCCCACCACCTCCATTGACTGCTTCACCACCAGATCCTTCACCTCCTGCTGCAGAAAATCCTCCCCCCTCACCTTCTCCAATTCTTCCTCCTCCAGCAAATAACTCAACACCATCATCGCCTGGTAAGCCTTCTCCATCACGGGGAAGGCCATCGGAAAGTACTCCTTCACGCCCTTCACATGCACCACCTCCATCAGTTTCTAAGTCTCCTCCCTCCACAAATGCTGCCCCTCCTTCCAAAACGCCTTCAACCCCTTCAGTCCCTCCTCCAAAGTCTTCGCATGCTCCTCCACACAATGCATCTGCAGCTAACAGGCCCTCTGCATCCCTACCCTCTTTTCCAACAGCGTCGCCTACTGGTAAATCATCCAATCATAGAAATACGTCCACAAACAACAAACCTTCACTTCCAGGAGGGTCAACTACTGGACTGGTCACAGTTATTGGCATTATATTTGGCTTTGTTGTTCTCATCCTTCTTGTTATGGCGATGTGGTTTGTATGGAGGCGGAAGAGAAAGGAAGCAAGATCAAAAGTTGGTTATGCTATGCCTTCCCCTTATGCCTCATCTCAAAGCTCAGGCGCAACGGTCTTAAGGCAACAATCTTCCCTTTCTCATAATGGGTATGGTAGTGATTTCGCATATTCACCATCAGATCCAGGTGGACAAAGTGGTTCAAGATCGTGGTTTACATATGAAGAACTTGTCCAAGCAACAAATGGATTTTCAGCACAAAATCTGTTGGGTGAAGGTGGATTTGGTTGTGTCTACAAAGGCTTTCTCATGGATGGAAGAGCGGTAGCTGTGAAACAGCTCAAAGATGGAGGTGGGCAAGGGGAACGTGAGTTTAGAGCAGAAGTTGAAATTATTAGCCGAGTACATCATCGCCACCTTGTTTCCTTGGTGGGCTACTGTATATCTGAGCATCAGAGATTGCTTGTCTATGACTATGTTCCCAACAATACCCTTCATTACCATCTCCATGGTCAAAACAGGCCAGTCATGGATTGGGCTACAAGAGTGAAGGTTGCAGTTGGCGCAGCTCGTGGAATAGCTTACCTACATGAAGACTGCCATCCACGCATTATTCACCGAGACATAAAGTCATCAAACATCCTTCTTGATAACAACTTTGAAGCTCAAGTTTCCGATTTTGGGCTTGCAAAATTAGCAATGGATTCATTTACACATGTAACCACCCGAGTGATGGGGACCTTCGGGTACATGGCACCAGAATATGCAACAAGTGGGAAACTGACTGAAAAGTCGGATGTTTATTCATTCGGGGTTGTGCTTTTGGAGCTAATTACAGGTCGGAAGCCTGTAGATGCCTCTCAGCCCACTGGTGATGAGAGCCTGATTGAATGGGCTCGACCTCTATTGAATCAAGTGCTTGAAAATGGAGACTATGATATATTGGTAGATCCACGTCTCGAGAAGAACTATAATAGAAATGAAATGTTTCGGATGATAGAGGCTGCGGCTGCCTGTGTGCGTCACTCTGCGGCAAAAAGACCACGAATGAGTCAGGTCGCGAGAGCTTTGGATTCGATAGATGAGTTTTCATATCTCTGGAATGGAATAAAACCTGGCCACAGTACAACCTTTAATCCTTCACCACCATCTGCACAAGTCAGAATGTTTCAAAGGATGGTTTTCGGTGGGGCCACTCAAAATTTCAGTTCCAGTTTCTTTAACGATTCTCAGAGTAGCTGGAGAAGCAGAGACCAGGAGGACTCAAGACACCATGATCCCCCAAAATAA 2052 0.4732 MASASPSPNSSPSAVPPTSSNNTIPPPSSPSLSTNSSKTPPPPPPSPTNPSAPPPAQAVPSTPPPSPSLSPPLPSPPAAAIAPAPNSTSPTPPSLSPPPPLTASPPDPSPPAAENPPPSPSPILPPPANNSTPSSPGKPSPSRGRPSESTPSRPSHAPPPSVSKSPPSTNAAPPSKTPSTPSVPPPKSSHAPPHNASAANRPSASLPSFPTASPTGKSSNHRNTSTNNKPSLPGGSTTGLVTVIGIIFGFVVLILLVMAMWFVWRRKRKEARSKVGYAMPSPYASSQSSGATVLRQQSSLSHNGYGSDFAYSPSDPGGQSGSRSWFTYEELVQATNGFSAQNLLGEGGFGCVYKGFLMDGRAVAVKQLKDGGGQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLVYDYVPNNTLHYHLHGQNRPVMDWATRVKVAVGAARGIAYLHEDCHPRIIHRDIKSSNILLDNNFEAQVSDFGLAKLAMDSFTHVTTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDASQPTGDESLIEWARPLLNQVLENGDYDILVDPRLEKNYNRNEMFRMIEAAAACVRHSAAKRPRMSQVARALDSIDEFSYLWNGIKPGHSTTFNPSPPSAQVRMFQRMVFGGATQNFSSSFFNDSQSSWRSRDQEDSRHHDPPK 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g1019 683 CDD STKc_IRAK 344 614 - -
Lele46g1019 683 Gene3D Phosphorylase Kinase; domain 1 318 413 - -
Lele46g1019 683 Gene3D Transferase(Phosphotransferase) domain 1 414 620 - -
Lele46g1019 683 Pfam Protein tyrosine and serine/threonine kinase 341 610 IPR001245 GO:0004672|GO:0006468
Lele46g1019 683 MobiDBLite consensus disorder prediction 1 236 - -
Lele46g1019 683 MobiDBLite consensus disorder prediction 152 191 - -
Lele46g1019 683 FunFam Proline-rich receptor-like protein kinase PERK8 311 413 - -
Lele46g1019 683 ProSitePatterns Protein kinases ATP-binding region signature. 344 366 IPR017441 GO:0005524
Lele46g1019 683 MobiDBLite consensus disorder prediction 1 18 - -
Lele46g1019 683 FunFam proline-rich receptor-like protein kinase PERK8 414 626 - -
Lele46g1019 683 ProSitePatterns Serine/Threonine protein kinases active-site signature. 458 470 IPR008271 GO:0004672|GO:0006468
Lele46g1019 683 MobiDBLite consensus disorder prediction 36 134 - -
Lele46g1019 683 ProSiteProfiles Protein kinase domain profile. 338 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele46g1019 683 SMART serkin_6 338 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele46g1019 683 MobiDBLite consensus disorder prediction 668 683 - -
Lele46g1019 683 MobiDBLite consensus disorder prediction 193 236 - -
Lele46g1019 683 SUPERFAMILY Protein kinase-like (PK-like) 317 611 IPR011009 -
Lele46g1019 683 MobiDBLite consensus disorder prediction 135 151 - -
Lele46g1019 683 MobiDBLite consensus disorder prediction 660 683 - -
Lele46g1019 683 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 252 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g1019 Lele-ChrLele46 18154713 18159054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g1019 210 673 Trihelix Transcription Factor Family AT5G38560 67.505 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lele46g1019 PK_Tyr_Ser-Thr 7.9e-47 CL0016