Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0914 ATGAAGAGGGAAGGAGATCATCATCAGGTTCTCGATCACAGCATCGCCATGGCCAACTGTTTGATGTTGCTTTCTCGTGGAGCAGGCCACCAATTCGCTCCGCCGATCATCGCCTCCTCCCATGACGCCGACGTCGATAGCCACCACCGCGTGTTCGAGTGCAAGACTTGTAACCGGCAATTCCCATCATTTCAAGCTCTGGGCGGCCACCGGGCGAGCCATAAGAAGCCGAGGCTGGCCATCGCCGGACTCGACGGTGAGATGCATGTGCTTCATGACGTCGCCGCCAAGCCTAAGACTCATGAGTGTTCCATTTGTGGTGTGGAGTTTGCAATAGGGCAAGCTTTAGGTGGTCATATGAGAAGGCACAGATCAGCTGCAACTACTTTGAATAATAGTGTTCAGAAAAAAACGATAAAAACGACGACGTTGAGTAGCAGCAGTGATGGTAGTAGTAGTTGTCTTGATTCTGATCATCAGGTTCATAGTTCTGGAGAAAATAAGAAGACAATTTTACTTTTGGATCTCAATTTAACACCTTTGGAGAATGATTTAGAGTTTTAG 564 0.4823 MKREGDHHQVLDHSIAMANCLMLLSRGAGHQFAPPIIASSHDADVDSHHRVFECKTCNRQFPSFQALGGHRASHKKPRLAIAGLDGEMHVLHDVAAKPKTHECSICGVEFAIGQALGGHMRRHRSAATTLNNSVQKKTIKTTTLSSSSDGSSSCLDSDHQVHSSGENKKTILLLDLNLTPLENDLEF 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0914 187 PANTHER ZINC FINGER PROTEIN ZAT5 13 183 - -
Lele46g0914 187 MobiDBLite consensus disorder prediction 142 160 - -
Lele46g0914 187 SUPERFAMILY beta-beta-alpha zinc fingers 50 123 IPR036236 -
Lele46g0914 187 SMART c2h2final6 52 74 IPR013087 -
Lele46g0914 187 SMART c2h2final6 101 123 IPR013087 -
Lele46g0914 187 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Lele46g0914 187 Pfam C2H2-type zinc finger 101 125 - -
Lele46g0914 187 Pfam C2H2-type zinc finger 51 77 - -
Lele46g0914 187 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Lele46g0914 187 MobiDBLite consensus disorder prediction 142 162 - -
Lele46g0914 187 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
Lele46g0914 187 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Lele46g0914 187 Gene3D Classic Zinc Finger 49 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0914 Lele-ChrLele46 16869448 16870011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0914 17 184 C2H2 Transcription Factor Family AT2G28710 44.048 1.59e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele46g0914 zf-C2H2_6 3.7e-10 CL0361