Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0911 ATGGTTCTCTCCAACAAGAAGCTTAAACAAAAGCTTAGAGCGGAGTTAACTCAATCTCAATCAGCAAATCCAGATTCTTCTTTCAAAAATCTTATTGACCCTGCTGCGACCCAGCAAATCCGATTATCAAAGAGAGAGAAGCGCCGAAAGGTTCGCTCTTTGCAACAACCAGAGACTACCCAAGAAGGTGGTGATGGTCGTAGCGTGGATGAGAGTAAAGAAGACGAGGGAACACAGAAGAAGGGCAAAAAGAGGAAGAGAGAGGCTGAGGACAACGGTGTGGCAAATGGGGATGTGAAGGATGCGAAGAAATCGAAGAAGAAACGTGACAAGAAGAAGAAGAACAAGAAAAAGCTCAAAACGGACAAGGAAAAGGATGCTAATCCTGGAGACGAGAAGCTAGAGATTTCAGAGTTAACTAAGAGTAATGGCAGTGAACAAACTGTTGATGTTCCTACAAAAGTGTATGTTGGAGGAATTCCCTACTATTCAACCGAGGATGATATTCGAAGCTATTTTGAAGGCTGTGGCACAATTACTGAAATTGATTGCATGACGTTTCCTGAGACTGGGAAGTTTAGAGGAATTGCCCTTATCAGTTTTAAGACTGAAGCTGCTGCTAAACGAGCGTTGGCTCTTGATGGATCTGACATGGGAGGACTCTTTCTTAAAATCCAACCATATAAAACAACTCGAAGCGTTAAAGCGTCGGATTTTGCCCCAAAACCTGTGGAGGGCTACAACAGAATCTATGTTGGAAATTTGTCATGGGACATAACAGAGGATCAATTAAGGACTCTGTTCTCCAACTGCAGTGTATCATCCATACGTTTCGGCATGGATAAGGAGACGGGAGAATTCCGAGGGTACGCCCACGTGAATTTCACCAACAATCAATCGCTGAAAACAGCACTTTCCTTGGACCAAAAGGTGATGTGTGGGAGACCCGTTAGGATAACTTGTGCAGTTCCTTTGAAGAAGCCATGGAAACAAGCAACAACCGATGCTGCGCCTACTACGACGAACACCCAAGTCGAAAGTGAGAAGTCAAGCTCTACTGGAAGTGGCAAAATGAAGAGGAGGACATGCTTTGAGTGTGGTGAAAAGGGACATATTTCTTCTGCATGCCCAAAGAGACAGAATGCTGATTCAAATACAAGCTAA 1164 0.4399 MVLSNKKLKQKLRAELTQSQSANPDSSFKNLIDPAATQQIRLSKREKRRKVRSLQQPETTQEGGDGRSVDESKEDEGTQKKGKKRKREAEDNGVANGDVKDAKKSKKKRDKKKKNKKKLKTDKEKDANPGDEKLEISELTKSNGSEQTVDVPTKVYVGGIPYYSTEDDIRSYFEGCGTITEIDCMTFPETGKFRGIALISFKTEAAAKRALALDGSDMGGLFLKIQPYKTTRSVKASDFAPKPVEGYNRIYVGNLSWDITEDQLRTLFSNCSVSSIRFGMDKETGEFRGYAHVNFTNNQSLKTALSLDQKVMCGRPVRITCAVPLKKPWKQATTDAAPTTTNTQVESEKSSSTGSGKMKRRTCFECGEKGHISSACPKRQNADSNTS 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0911 387 Gene3D - 89 236 IPR012677 -
Lele46g0911 387 SMART c2hcfinal6 362 378 IPR001878 GO:0003676|GO:0008270
Lele46g0911 387 MobiDBLite consensus disorder prediction 105 119 - -
Lele46g0911 387 Coils Coil 102 122 - -
Lele46g0911 387 SMART rrm1_1 154 226 IPR000504 GO:0003723
Lele46g0911 387 SMART rrm1_1 249 320 IPR000504 GO:0003723
Lele46g0911 387 MobiDBLite consensus disorder prediction 1 146 - -
Lele46g0911 387 MobiDBLite consensus disorder prediction 120 139 - -
Lele46g0911 387 MobiDBLite consensus disorder prediction 333 358 - -
Lele46g0911 387 Gene3D - 339 387 - -
Lele46g0911 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 248 324 IPR000504 GO:0003723
Lele46g0911 387 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 153 230 IPR000504 GO:0003723
Lele46g0911 387 ProSiteProfiles Zinc finger CCHC-type profile. 363 378 IPR001878 GO:0003676|GO:0008270
Lele46g0911 387 Gene3D - 237 330 IPR012677 -
Lele46g0911 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 250 317 IPR000504 GO:0003723
Lele46g0911 387 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 155 221 IPR000504 GO:0003723
Lele46g0911 387 Pfam Zinc knuckle 361 378 IPR001878 GO:0003676|GO:0008270
Lele46g0911 387 SUPERFAMILY Retrovirus zinc finger-like domains 349 382 IPR036875 GO:0003676|GO:0008270
Lele46g0911 387 MobiDBLite consensus disorder prediction 331 359 - -
Lele46g0911 387 MobiDBLite consensus disorder prediction 64 104 - -
Lele46g0911 387 CDD RRM2_PHIP1 249 319 IPR034362 -
Lele46g0911 387 MobiDBLite consensus disorder prediction 14 37 - -
Lele46g0911 387 CDD RRM1_PHIP1 155 226 IPR034361 -
Lele46g0911 387 SUPERFAMILY RNA-binding domain, RBD 152 231 IPR035979 GO:0003676
Lele46g0911 387 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 86 227 - -
Lele46g0911 387 SUPERFAMILY RNA-binding domain, RBD 241 327 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0911 Lele-ChrLele46 16835617 16839148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0911 153 322 Eukaryotic Initiation Factors Gene Family AT3G16380 29.834 7.09e-08 52.4