Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0833 ATGAAAGGAATATCCTCTCGAGGTAATCATATTTGCTTCGGTAGATATGCTCTTCAAGCACTTGAACCCACTTGGATCACATCTAGACAAATAGAAGCAGGGCATCGAGCAATGTCACGAAATGCCCGACGTGGTGGAAAAATATGGGTACACATATTTCCAGACAAGCCAGTTATAGTAAGACCTACAGAAACACGTATGGGGTCAGGAAAAGGATCTCCCGAGTATTGGGTAGCTGTAGTTAAACCGGGTAGAATACTTTATGAGATGGGCGGAAATAGAGAAAAAAATGATATGATTCAACCTCAAACCCATTTGAATGTAGCCGATAACAGCGGGGCCCGCGAATTGATGTGTATTCGAATCATAGGAACTAGTAATCGACGATATGCCTATATTGGTGACGTTATTATTGCTGTAATCAAGGAAGCAGTACCAAATACATCGTTAGAAAGATCAGAAGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAACAATGGTATGATAATACAATATGATGATAATGCTGCAGTTGTCATTGATCAAGAAGGAAATCCAAAAGGAACTCGAATTTTTGGTGCGATCGCTCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCCGAAGTATTATAA 663 0.3937 MKGISSRGNHICFGRYALQALEPTWITSRQIEAGHRAMSRNARRGGKIWVHIFPDKPVIVRPTETRMGSGKGSPEYWVAVVKPGRILYEMGGNREKNDMIQPQTHLNVADNSGARELMCIRIIGTSNRRYAYIGDVIIAVIKEAVPNTSLERSEVIRAVIVRTCKELKRNNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0833 220 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Lele46g0833 220 TIGRFAM rplN_bact: ribosomal protein uL14 99 220 IPR005745 GO:0003735|GO:0006412|GO:0015934
Lele46g0833 220 CDD Ribosomal_L16_L10e 7 101 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele46g0833 220 Hamap 50S ribosomal protein L14 [rplN]. 99 220 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lele46g0833 220 Gene3D Ribosomal protein L10e/L16 1 102 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele46g0833 220 TIGRFAM rplP_bact: ribosomal protein uL16 1 96 IPR000114 GO:0003735|GO:0006412|GO:0019843
Lele46g0833 220 ProSitePatterns Ribosomal protein L14 signature. 158 184 IPR019972 -
Lele46g0833 220 SMART Ribosomal_L14_2 99 220 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lele46g0833 220 Pfam Ribosomal protein L16p/L10e 2 96 IPR016180 GO:0003735|GO:0005840|GO:0006412
Lele46g0833 220 Gene3D Ribosomal protein L14 103 220 IPR036853 GO:0003735|GO:0005840|GO:0006412
Lele46g0833 220 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Lele46g0833 220 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Lele46g0833 220 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Lele46g0833 220 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
Lele46g0833 220 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 99 219 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lele46g0833 220 FunFam 50S ribosomal protein L14, chloroplastic 99 220 - -
Lele46g0833 220 SUPERFAMILY Ribosomal protein L16p/L10e 1 95 IPR036920 GO:0003735|GO:0005840|GO:0006412
Lele46g0833 220 Pfam Ribosomal protein L14p/L23e 99 220 IPR000218 GO:0003735|GO:0005840|GO:0006412
Lele46g0833 220 SUPERFAMILY Ribosomal protein L14 99 220 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0833 Lele-ChrLele46 12382644 12387176 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0833 92 220 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 32.836 8.13e-16 70.1