Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0685 ATGCGATCCCTTAATATCCTTCTTCCATTGCCGTCGCTGCAAAACCCTACCTCCGACCACATTCATTTCTTCAAACCCATTAGCGCCTTCAATTTCCGCCCAACTTCCAAAACCCTAACTAACGGTGGACTCCAGTGCCGGAAGGTTAATTGCAATGCTTTGAGGGATTCCGGTGAAGACACTAAGGTTGTATTTGACTCCAGTGGCGGCGATGAAGGCGGAGGGAGTGGTGGTAACGGCGGTGATGGTGGTGAGGATAATAGGGAGGTGAAGAAAAAAGATGGGTCTTCTTCGGGACCTTTGCTGGATTGGTTGAATTTCACTTCTGATGACGCAAAGACCGTCTTTGCGGCACTGGCAATCTCGCTTGCGTTTCGGTCGTTTGTGGCCGAGCCTAGGTACATTCCTTCCTTGTCAATGTATCCTACCTTTGATGTTGGAGATCGACTTGTTGCAGAGAAGGTTTCATACTATTTTAGAAAGCCTTGCACAAATGACATAGTAATATTTAAGAGCCCACCAATCCTTCAGGAAGTTGGGTACACCGATGATGATGTCTTTATAAAACGAGTGGTTGCAAAAGAAGGTGATATTGTGGAGGTTCATAAAGGGCATCTTATAGTTAATGGGGTTGAAAGGAATGAAAAGTTCATCCTTGAACCACCTTCTTATGACATGACACCTACGCGTGTGCCAGAGAATTACGTTTTTGTGATGGGAGACAATCGTAACAACAGCTATGATTCGCATGTGTGGGGCCCCCTGCCAGCCAAGAACATCATAGGGAGATCAGTTTTTCGGTATTGGCCACCAAATAGGATTGGGAGCACAGTTCCGGAGAAGAGTTGTCCTGTTGAAAGTGACCAGGGGACTAGTATAGCTTCGGAATGA 891 0.4635 MRSLNILLPLPSLQNPTSDHIHFFKPISAFNFRPTSKTLTNGGLQCRKVNCNALRDSGEDTKVVFDSSGGDEGGGSGGNGGDGGEDNREVKKKDGSSSGPLLDWLNFTSDDAKTVFAALAISLAFRSFVAEPRYIPSLSMYPTFDVGDRLVAEKVSYYFRKPCTNDIVIFKSPPILQEVGYTDDDVFIKRVVAKEGDIVEVHKGHLIVNGVERNEKFILEPPSYDMTPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIGSTVPEKSCPVESDQGTSIASE 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0685 296 ProSitePatterns Signal peptidases I serine active site. 137 144 IPR019756 GO:0004252|GO:0016020
Lele46g0685 296 MobiDBLite consensus disorder prediction 282 296 - -
Lele46g0685 296 Gene3D Umud Fragment, subunit A 125 282 - -
Lele46g0685 296 PANTHER SIGNAL PEPTIDASE I 102 275 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele46g0685 296 TIGRFAM sigpep_I_bact: signal peptidase I 113 271 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele46g0685 296 MobiDBLite consensus disorder prediction 62 97 - -
Lele46g0685 296 Pfam Signal peptidase, peptidase S26 112 269 IPR019533 GO:0004252|GO:0006465
Lele46g0685 296 CDD S26_SPase_I 131 263 IPR019533 GO:0004252|GO:0006465
Lele46g0685 296 FunFam Peptidase/ serine-type peptidase 137 268 - -
Lele46g0685 296 PRINTS Bacterial leader peptidase 1 (S26A) family signature 128 144 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele46g0685 296 PRINTS Bacterial leader peptidase 1 (S26A) family signature 187 199 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele46g0685 296 PRINTS Bacterial leader peptidase 1 (S26A) family signature 231 250 IPR000223 GO:0006508|GO:0008236|GO:0016020
Lele46g0685 296 MobiDBLite consensus disorder prediction 277 296 - -
Lele46g0685 296 SUPERFAMILY LexA/Signal peptidase 126 277 IPR036286 -
Lele46g0685 296 ProSitePatterns Signal peptidases I signature 3. 236 249 IPR019758 GO:0004252|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0685 Lele-ChrLele46 5079467 5081981 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0685 140 270 MADS-box Gene Family AT1G29960 33.083 2.65e-12 61.2