Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0676 ATGGAGCAGAACGACGTGGTTTCACCGTTCGTTATGAAGACTTTTCATATGGTCAGCGATCCAACCACGGATGCTTTCATCACTTGGGGTCGAGCCAACAATAGCTTCATCGTCGTCGATCCTTTGGATTTCTCTCGGATGATCCTCCCTGCATATTTCAAGCACAATAACTTTTCCAGCTTCGTTCGTCAGTTAAACACCTACGGGTTTAGAAAGGTGGATCCAGATCGATGGGAATTCGCGAACGAGTGGTTTCTTCGGGGGCAGAAGCACTTGTTGAAGAATATTGTGAGGAGGAAACAAAGTAGGAGTAGTAGTTGTTCTTTGTCGTTGTTTCAGGGGAAGAATAATGAGGAGGTGGAAGACGAAGCGTTGATGATGGAAATTGCGAGGTTGAAGGAAGAGCAGAAATCTTTGGAGGAAGAACTTCAAGGGATGAATAAGAGATTGGAGACCACAGAGAAACGACCTCAGCAAATGATGGCGTTTCTTTACAAAGTCGTGGAGGACCCAGACGTCCTTTCTCGGATTTTGTTGGAGAAAGACCAGAAGCAATTGGGAGAGAAGAAACGGCGGTTGATATCGTCATCATCGCCGTCGTCTTCGTCTGGTATGGCGGCGGTGAAGACGGAGTTTGAAGAAGAGGAAGCTACTTTGGGTGGTGCGATAATATCTTCGCCGTTGCCTGAAAAGACTACTGGATTTGAGTTCGGTCGTTATAGTCAGGCACCGCCGACGACGGAGGAAACAATACTCTCCGGCGCCGATACGAGTTCGGGTGGGTGGAGCGAGAGAAACGATGCTATAAGGTTGAGGCCTCGGATAAATCAACAAGCTTATAATAATTGGTCATCAAGCCCGTTGACGGCGGTTGTGGCAGCGAGAATGGATGAGAAAGCGTCGGCGATGATGTCGATGTCGGCGCTTGAGGGAGAACGCAATTCGGCGAGAGAGGAGCAAAGGAGCTATTTTACAGAAATGGCGGCGGAGAACAATCCACGGCCACCTTATCCATTTTCGCTGTTGGAAGGTGGCTTTTAG 1041 0.4851 MEQNDVVSPFVMKTFHMVSDPTTDAFITWGRANNSFIVVDPLDFSRMILPAYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRRKQSRSSSCSLSLFQGKNNEEVEDEALMMEIARLKEEQKSLEEELQGMNKRLETTEKRPQQMMAFLYKVVEDPDVLSRILLEKDQKQLGEKKRRLISSSSPSSSSGMAAVKTEFEEEEATLGGAIISSPLPEKTTGFEFGRYSQAPPTTEETILSGADTSSGGWSERNDAIRLRPRINQQAYNNWSSSPLTAVVAARMDEKASAMMSMSALEGERNSAREEQRSYFTEMAAENNPRPPYPFSLLEGGF 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0676 346 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele46g0676 346 Gene3D - 2 100 IPR036388 -
Lele46g0676 346 Coils Coil 115 156 - -
Lele46g0676 346 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele46g0676 346 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele46g0676 346 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele46g0676 346 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele46g0676 346 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele46g0676 346 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 7 214 IPR027725 -
Lele46g0676 346 MobiDBLite consensus disorder prediction 242 263 - -
Lele46g0676 346 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Lele46g0676 346 FunFam Heat stress transcription factor B-4 2 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0676 Lele-ChrLele46 4968899 4970073 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0676 1 203 HSF AT4G17750 45.532 5.62e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele46g0676 HSF_DNA-bind 2.9e-30 CL0123