Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0654 ATGAATGATAATGAGTTTAGAAGCATGGAGTTTTTACTCAAAGAGATGGCGAATCGACTGAAGGAAGATGAGAAAAATGAGCGATTAATTAGAGGTCTTCTCAAACTTCCAGCGAATCGAAGATGTATTAATTGCGACAGTCTGGGGCCACAATATGTGTGCACAAATTTCTCGACATTTGTTTGCACAAACTGTAGTGGGATACACCGGGAATTTACACATCGGGTAAAGTCAGTATCAATGGCCAAGTTCACTTCACAAGAAGTTAGTGCACTTCAGGAAGGAGGAAATCAGCTTGCAAAAGAAGTTTATTTTAAAGAGTGGGACCAGAGAAGTCATTCTCTCCCTGAAAACAGTAATGTTGGCGGGCTCCGCAGCTTTATTAAACAAGTTTATGTGGATAAAAGATTCACCAGTGAGAGGACCTATGACAAATCACTGAGAGTAAACACAGGTGACAAGGATCATTTCTCAGAAAACTCAAGAGTTCAATCATATCAGGGTGGTCCTAAAAGCCCACAATATGATGACACATATAAACACCGATATAGTGACAGCTCTAGCCCTGTTGGAAGAAGTCCTGGGTATGATCAAGAAAGTAGGCAGTACAGTAATGAGAAGAGAAGTCCTGGCCATCCTCCGATTATCAATGATTGTCGAGAAGATAGATTTGGAGATGATAGGAGGTTTGAAGGTCGTAGAGTATCTGATGGAGATTATAAGCTAAAAGGCCAATTTCCTGGACAAGCCAGCAACCTGAATCCTTCAAGTCCACCTGTGGTTCGGTCTGTTAGAGATATTTTGGGAGAAAATGTTGCGCCTGTTCAAATAAGTGAACCCCCTGAAGCAAATAGTAAAAAAGCTAATGATGGCTCAGCTCTCACACAGAGAACTGTATCTTCCAGTAGCTTGGCATCAAGCATTGGAAACCCTGCAGAAGTTAAGCTTGAGACTTCTAAGAGCCTTATTGATTTTGATGATGAGCCCGAGCCTCCTCTAGCTCCAGCAATTACTCATGCCCAACAAACTACTGCCCAATCCATTTTGGAGCAACCAAATTCCAGTGATGTCAACAATTGGGCCTCTTTTGATGTGGCCCTAGAAGCAAAAGCAATTCAAACTCCAAATATAAATACACTAGAATCCATGCTTTCCCAACTGTCAGTATCATCATCATTACCAGCTCATGCTCTTCAAGTCCAACATGGTTCCGATGTCGTAACCCCATTTCCTGGGAGCAGTATGACATTACTAAGAACTGGGAACGTATCTGTTTCACCTGCTTGGCCTGCACCAGCACCATCTCTTACTGCAACTGCTGTTGGAGCTGCCACTATTAGCAGCTTTGCGAATTTTCCATACAGTGTTGCTTCAGCATCGCAGCATCTGCAGCCTTTGTTCCCTCCCAATGTGGGTCAGTCTTCGAATCATCAGTCTACACCACCACCAGTAGGAGCATTGAGTAATCAGCCATGGAGTATACCTCCAACACCAACAACACAAGGCCATCCAAGCATGTCACTGCCACATGTCTCCCATCTTATCTCTAAGCCTGCCACTGAGACTAGCTCCAGTGCGGCTTCAGGACTGTCTGTAGAAGTAAAACCAAGTGGAAGAAAAGAACTTCCTGCGGATCTTTTTACTGTAAATTATTGTTCCTTCCCTGCTGTAGTTCCAGGGTGGCAAATGGTTCCTCCTTATGGCACGGGAATCTCAATGCCATATAATACTGTGCCCATGCCAAGTCTTCAGCGACCATCAAAATCAACAAATCCATTTGATATAGGCAGTGAACCCCCTCCAGTGTTTGCTTTGAGACAATCCTTGCAAGGTGCTCTGCCAAGTATATCAACTTCAGGTTCAATGCTTCCTTCAGGCCTAAGTAATCCATCACTTGCGTGGAATCCACCTGGGTACAGATCAGCGCTGCCCCCACAAACACAACCTCATCCACCAGCAATGGCAGCAAGGCCTTACATGGGGCAACAAGTGCAAACGAACGTGGCAATGCCAAGGCATCAGGGAATTGGGAGCTTTGGTGCTGAGGGAGCTGCTTTTGGCTTCTCAAACATAGATCAGCATATGACTGCTACTTCCTCAGCCCCTGTTTCCTCAAATCTCTCATCTGCAGCAAGGAATCCATTCGGATGA 2151 0.4463 MNDNEFRSMEFLLKEMANRLKEDEKNERLIRGLLKLPANRRCINCDSLGPQYVCTNFSTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVSALQEGGNQLAKEVYFKEWDQRSHSLPENSNVGGLRSFIKQVYVDKRFTSERTYDKSLRVNTGDKDHFSENSRVQSYQGGPKSPQYDDTYKHRYSDSSSPVGRSPGYDQESRQYSNEKRSPGHPPIINDCREDRFGDDRRFEGRRVSDGDYKLKGQFPGQASNLNPSSPPVVRSVRDILGENVAPVQISEPPEANSKKANDGSALTQRTVSSSSLASSIGNPAEVKLETSKSLIDFDDEPEPPLAPAITHAQQTTAQSILEQPNSSDVNNWASFDVALEAKAIQTPNINTLESMLSQLSVSSSLPAHALQVQHGSDVVTPFPGSSMTLLRTGNVSVSPAWPAPAPSLTATAVGAATISSFANFPYSVASASQHLQPLFPPNVGQSSNHQSTPPPVGALSNQPWSIPPTPTTQGHPSMSLPHVSHLISKPATETSSSAASGLSVEVKPSGRKELPADLFTVNYCSFPAVVPGWQMVPPYGTGISMPYNTVPMPSLQRPSKSTNPFDIGSEPPPVFALRQSLQGALPSISTSGSMLPSGLSNPSLAWNPPGYRSALPPQTQPHPPAMAARPYMGQQVQTNVAMPRHQGIGSFGAEGAAFGFSNIDQHMTATSSAPVSSNLSSAARNPFG 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0654 716 MobiDBLite consensus disorder prediction 273 311 - -
Lele46g0654 716 PANTHER ARFGAP/RECO-RELATED 16 716 IPR044820 GO:0005096
Lele46g0654 716 MobiDBLite consensus disorder prediction 184 200 - -
Lele46g0654 716 CDD ArfGap_AGFG 27 139 - -
Lele46g0654 716 MobiDBLite consensus disorder prediction 213 240 - -
Lele46g0654 716 ProSiteProfiles ARF GTPase-activating proteins domain profile. 27 145 IPR001164 GO:0005096
Lele46g0654 716 SMART arf_gap_3 27 145 IPR001164 GO:0005096
Lele46g0654 716 MobiDBLite consensus disorder prediction 150 261 - -
Lele46g0654 716 PRINTS HIV Rev interacting protein signature 39 58 IPR001164 GO:0005096
Lele46g0654 716 PRINTS HIV Rev interacting protein signature 58 75 IPR001164 GO:0005096
Lele46g0654 716 PRINTS HIV Rev interacting protein signature 76 97 IPR001164 GO:0005096
Lele46g0654 716 MobiDBLite consensus disorder prediction 467 507 - -
Lele46g0654 716 Gene3D Arf GTPase activating protein 16 150 IPR038508 -
Lele46g0654 716 SUPERFAMILY ArfGap/RecO-like zinc finger 26 139 IPR037278 -
Lele46g0654 716 Pfam Putative GTPase activating protein for Arf 28 140 IPR001164 GO:0005096
Lele46g0654 716 MobiDBLite consensus disorder prediction 467 510 - -
Lele46g0654 716 MobiDBLite consensus disorder prediction 282 311 - -
Lele46g0654 716 FunFam Arf-GAP domain and FG repeat-containing protein 1 16 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0654 Lele-ChrLele46 4728193 4735201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0654 27 104 C2H2 Transcription Factor Family AT4G05330 37.805 9.93e-12 65.1