Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0651 ATGGGATGGGATAGTCTGCATTTTGATTTATATGATAGCATAATTAGGGAATTTCAGTGCATGTTTTGTGGGGGTCCCCTTCCTGGTCCCTTCAGTCATCAATGGGGCAAGGTAAATGATTTGATTCAGGCCTTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGCACTCCGGAAAAAAATGGTCATTCAGATGATGCTTCAAGAAGTCTTGAACTCCTTCAAGAGTTCTTGAAATCTGCTCCTAAGAAGGAACTTCTTCGAGCGTGCTTTTATAAGGACAGAAATAACATTTCATCAAAAAGAAAGATGCCAGAAACTAAGTCGACAAGTAAGGTTGTCAAGAAACAGGACAACAAGAAGGTTTCTACTCTCAGCAACCAGCCCTCTAGGAAGCAGCACAGGAAGAGCAAAAACCCTACTAGGCTGAAGCCAGTTCCCGACGAGCCTTCTGATTCTGGACATTCAGACTCCTGGATCTGTAAAAACTCTGCTTGTAGGGCCTTTCTATCTGCAGATGACAAATTTTGTAGAAGGTGCTCTTGCTGTATTTGTCACCTATTTGATAGTAATAAGGATCCTAGTCTTTGGTTGGTATGCTCATCTGAATCCGATGAAGGGGACTCCTGTGGGTTTTCTTGCCATATTGAGTGTGCCCTTCAACATGAAAAAGTGGGAGTTGTTGATCATGGGCAACTGATGCAACTAGATGGTGGCTATTGTTGTGCATCCTGTGGTAAAGTTACAGGGATACTTAGATGTTGGAAGAAGCAGCTAAATATGGCAAAAGATGCTCGGCGAGTTGATGTGCTCTGTTATAGGTTATATTTGAGTTACAGGCTCTTGGATGGGACTTCGAGGTTTAAAGAATTGCATGACATTGTACTTGAGGCAAAAGCGAAGCTAGAAACAGAAGTTGGTCCAGTTAATGGGACATCTGATAAGATGGTGAGAGGCATTGTCAGCAGACTCTCTATTGCCAGTGAGGTGCAGAAACTCTGCTCTCTTGCAATTGAGAAAGCTGATGGGTGGTCTTCCGTTGTGAATCCAGATTCCATAGATGGTTCACTTCCTCCTGCCTGCAAATTTGTTTTTGAAGAGGTAACGGCTTCCTCGGTCAAAATCATTTTGATTAACAAATCCACTGCATCTTCTAAGGACATTAAGGGCTACAAGCTCTGGTACTACAAGAGTAATGAGGAGTTGCTCGCAACTGATCCTGTTTGTGAGGTCCCAAATAATCAGAAGAGGATTCTGTTATCCAACCTCCAGCCGGGCACAGAATATACTTTTCGCATTATATCTTATACAGATATGGGTCAGCTGGGTTATTCTGAAGCCAAGTGTTTCACCAAGAGCGCGGATCCAGCTAAAAAAGATTCCTCTTTACCAATTGATTTAGGTCGTAAAAAAGAGAACGTTCAAATTGGAGCCAGTTCATCTGGCTCCAAAACAGAGCCCAATCCTACAGTAGCAGATTCAGGGTTTAAGGTTCGAGACCTTGGGAAAGTTGTGGGTCGTGCTTGGGATAAAGATCAAGGTCCCTTGGAAGGGTTTTGCAGTGTTGATACAAAAAATTGCTGCAGGGAAACCGAAATGGTCAAGCTTAAAATTTCAGAAGAGCAGATGCCTGTGGTTTCACGGGGTCTTGATTTAAATGTTGTTTCAGTGCCTGATCTAAATGAAGAACTCGTCCCTCCTTTTGAGTCTTCCAAGGATGAAGATAATGGCTGCACTTTGCAGAAGGCTGTTGTGGCAGACGATGATGCTGCTTCTCGGTATGCGCAGAAAATCAGTTTAGCAAAATCAAATGGTAGTGGTGACTCCCATACCTGGATGAACGGGCCAACTGGAGAAGTTCCAACCGTTGACTCCCGCTTAGACGCATGCAAGAAAAGGGTAGCTAGCATCAACGAAGAGACACACGATTGCAATAGCACTTTGGTGAACGGCTCTCCTCTCGGAGTATCAGATGGAACATGCTCCCTGGATGAAAACTACGAGTATTGCGTGAAAGTATTTCGGTGGCTAGAATGTGAGGGTCACATCAAGCAGGAATTTCGGTTGAAGTTGCTAACATGGTTTAGTTTGAGGTCAACGGAGCAGGAACGCAGGGTTGTGAATACCTTCATTCAAACTCTGCTTGATGATCCATCTAGTTTGGCAGGGCAACTGATTGACTCATTTTCTGATATCATATCCAACAAGAGGCTCAGAAATGGATAG 2229 0.437 MGWDSLHFDLYDSIIREFQCMFCGGPLPGPFSHQWGKVNDLIQAFSGVQSLSSSVQSTPEKNGHSDDASRSLELLQEFLKSAPKKELLRACFYKDRNNISSKRKMPETKSTSKVVKKQDNKKVSTLSNQPSRKQHRKSKNPTRLKPVPDEPSDSGHSDSWICKNSACRAFLSADDKFCRRCSCCICHLFDSNKDPSLWLVCSSESDEGDSCGFSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILRCWKKQLNMAKDARRVDVLCYRLYLSYRLLDGTSRFKELHDIVLEAKAKLETEVGPVNGTSDKMVRGIVSRLSIASEVQKLCSLAIEKADGWSSVVNPDSIDGSLPPACKFVFEEVTASSVKIILINKSTASSKDIKGYKLWYYKSNEELLATDPVCEVPNNQKRILLSNLQPGTEYTFRIISYTDMGQLGYSEAKCFTKSADPAKKDSSLPIDLGRKKENVQIGASSSGSKTEPNPTVADSGFKVRDLGKVVGRAWDKDQGPLEGFCSVDTKNCCRETEMVKLKISEEQMPVVSRGLDLNVVSVPDLNEELVPPFESSKDEDNGCTLQKAVVADDDAASRYAQKISLAKSNGSGDSHTWMNGPTGEVPTVDSRLDACKKRVASINEETHDCNSTLVNGSPLGVSDGTCSLDENYEYCVKVFRWLECEGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLLDDPSSLAGQLIDSFSDIISNKRLRNG 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0651 742 CDD PHD_VIN3_plant 182 246 - -
Lele46g0651 742 ProSiteProfiles Fibronectin type-III domain profile. 359 457 IPR003961 GO:0005515
Lele46g0651 742 MobiDBLite consensus disorder prediction 102 120 - -
Lele46g0651 742 Gene3D Immunoglobulins 356 464 IPR013783 -
Lele46g0651 742 MobiDBLite consensus disorder prediction 475 491 - -
Lele46g0651 742 MobiDBLite consensus disorder prediction 102 158 - -
Lele46g0651 742 CDD FN3 363 452 IPR003961 GO:0005515
Lele46g0651 742 PANTHER VIN3-LIKE PROTEIN 2-RELATED 51 742 IPR044514 GO:0010048|GO:0040029
Lele46g0651 742 SUPERFAMILY Fibronectin type III 366 452 IPR036116 GO:0005515
Lele46g0651 742 Pfam Fibronectin type III domain 362 445 IPR003961 GO:0005515
Lele46g0651 742 MobiDBLite consensus disorder prediction 474 494 - -
Lele46g0651 742 Pfam PHD - plant homeodomain finger protein 162 280 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0651 Lele-ChrLele46 4702957 4706879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0651 159 742 PHD Gene Family AT3G24440 47.739 3.56e-170 500
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g0651 46 4702957 4706879 Lele47g0780 47 14137516 14141399 hybridization
Lele46g0651 46 4702957 4706879 Lele48g0829 48 13642778 13646716 hybridization