Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0617 ATGGGAATTTCTTCGAGTAGCGGAAGAGGAAGCAATTATTTCCATAACCCACATCTTCCACCACCTTTCTATTACACGGCAGAATCTCCTCCTCCTCCACCACCGCCGCCGCCTCAAGGCTACTATTTCTCCTCATCAACGCCTTATGCACTGCAAAGCAACAACTATGTGCCTCCCCCTCCTCAGACCCATATCTTCTGTTACTCAAATGCGTATAGCAATTGTTCCAATTATTCTAATTCTATGGTCGTTAGGTTTCAGTATCCCCCATCTTATTATGTAAATCATGCTAATGGGTGGCCTGCAATGTATCCTTCGGTTGGTCCTGTGGTCTCGCCACCGCCCTATGTTGATCATCGAACGGCTAAGAAGATCAGGAACGATGTGAACGTGCATAAAGATACATTGCGGCTGGAGGTAGATGAGCATTACCCTGATCAGCGCTTGGTTTCATTCGTTTTCGATGCCTTACATGATGGGAGCATTACTATAATCTACTTTGCAAAGGAGGAGGAAAAATGTAGGTTTGTACCATTGTTTCCCAATGTATTTGAGCCAATAAGAATACCTTTTCAGAAAGGAATAGGCCAGAAATTTTGTCAGCCCTCAGGAACAGGCATTGACAAAGGGTTTTTCGAGTTGGATGATCTGTCAAAACTGTCACTTGGAGATGATGTCTTCCCCCTTGTGATATGTGCTGAAACATGTTTGATAACTTCATCGGCAGATGAAAATCTAGGCACTTCCATGCTAGATTTTTCTCCTTGCATGCAGATTACTCAAGCCATAGTAGAGAAAGGCAATGGCGATGGTCCTTTACAAGTAAAAGTAGACAGGCAGATTCTGTGGATTGATGGGGTCCGTTATGAGTTAAGAGAGTTATATGGAATGGGAGGCTCAGCAGCAGCTGGTTTTGATGACAATGATTCTGGGAAGGAGTGCGTAATATGCATGACTGAACCAAAGGACACAGCTGTATTACCTTGTCGACACTTGTGCATGTGCAGTGACTGCGCACAAGCGTTGTGGCTTCAAACGAATAAATGCCCAATATGTCGTCAATCTATCAAGGAACTTATAGAGATTAAGATAAAAAATGGTGATTATTGGGATCTTAGATGTCAGGTGATGTATAGAAAATTCCATTTTGTGAATTGTGTTGATGGTGATATGTTCATAGCCCTTATAATAAGTTTGGAGCTAATATTGCCTTACAAGTTAGCATTTCTGTTGGCCAAAGTTGAGAATCTTCTAAGCTTGTATAGGTCAGAGACTGCCAACTTTTATGAGCAGGATTCTTTAGTAGACTTAGTGCGTAATATGAACAGATTAACGTAA 1338 0.4208 MGISSSSGRGSNYFHNPHLPPPFYYTAESPPPPPPPPPQGYYFSSSTPYALQSNNYVPPPPQTHIFCYSNAYSNCSNYSNSMVVRFQYPPSYYVNHANGWPAMYPSVGPVVSPPPYVDHRTAKKIRNDVNVHKDTLRLEVDEHYPDQRLVSFVFDALHDGSITIIYFAKEEEKCRFVPLFPNVFEPIRIPFQKGIGQKFCQPSGTGIDKGFFELDDLSKLSLGDDVFPLVICAETCLITSSADENLGTSMLDFSPCMQITQAIVEKGNGDGPLQVKVDRQILWIDGVRYELRELYGMGGSAAAGFDDNDSGKECVICMTEPKDTAVLPCRHLCMCSDCAQALWLQTNKCPICRQSIKELIEIKIKNGDYWDLRCQVMYRKFHFVNCVDGDMFIALIISLELILPYKLAFLLAKVENLLSLYRSETANFYEQDSLVDLVRNMNRLT 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0617 445 MobiDBLite consensus disorder prediction 24 44 - -
Lele46g0617 445 Coils Coil 443 445 - -
Lele46g0617 445 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 313 353 IPR045195 -
Lele46g0617 445 FunFam probable E3 ubiquitin-protein ligase LOG2 298 363 - -
Lele46g0617 445 Pfam Zinc finger, C3HC4 type (RING finger) 312 358 - -
Lele46g0617 445 ProSiteProfiles Zinc finger RING-type profile. 314 353 IPR001841 -
Lele46g0617 445 PANTHER MAHOGUNIN 37 363 IPR045194 GO:0061630
Lele46g0617 445 SMART ring_2 314 352 IPR001841 -
Lele46g0617 445 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 369 IPR013083 -
Lele46g0617 445 SUPERFAMILY RING/U-box 308 359 - -
Lele46g0617 445 MobiDBLite consensus disorder prediction 24 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0617 Lele-ChrLele46 4367562 4370755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0617 89 368 C3H Transcription Factor Family AT3G06140 57.986 2.34e-104 312