Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0612 ATGGCACTCCTGCAAAATTCACAAGTTGTGTTTCCCAGATGGTTCGCCATTTCAGAACCATCAATCTCCAAGACTCTGTTTCTAAGACTCCCACTGTGTCCAATGTTTAGTTCACTATCAATTTCGATTCCTGCCTCATCCCCCACTCTTCGCTGCCACAGCTGCAGTTTCAGCTCCAATTCTTCCGCCGAATTCAGTATTTCTTCTCCAGCCAAAGTCTTCATCAAAGGGCTTCCTCTGTCAACTTCTGGAGGACATTTGGTCAAGGCATTTTCAGAGTTTGGTGAAGTTACTCAAGTAAAGCTTCTCATGGATAAAGAATCTGGGAAGTTCCTAGGTATTGCATACATTTGGTTTGCCAAGGAAGAGTCTGCACAATTGGCTGTGGAACAGATGAATGGGAAGTTCTTCGATGGCAGGTTTATTGATGTCAGAATTTCGAGGGCTGGATCACCAAAAAATGGGAGGAACACAGCTCCATACAACCTAGATCCTTCCTGTGGTTCAAAAGCAACACCAGCTTCTTGTAACCTGCTTCTTTGCAATGCTGCTGCCATGGAGGTTATCCCACAAGCAATTTGTACTCGATATGGTCTTGCTGTAGGTGCAAATGTCATTTGGCTTGTGCGAATTCTAATGATAATCTGTTATCCCATTGCTTATCCCATTGGAAAGATCCTGGATATCGTATTGGGACATAACAAGGCTTTATTTAGGCGTTCCCAGTTAAAAGCTCTTGTCTCCATCCACAGTAAGGAGGCTGGGAAAGGTGGTGAGCTCACGCATGATGAGACCACAATTATCAGTGGAGCTCTAGATTTGACTGAAAAGGTCAAAAGTCTTCTCACTGTACGACCAGAAACAGATACCCCTGTTAGTGCTGTTTCCGTCCGAAGAGTTCGACGAGTTCCATCAGATATGCCTCTTTATGATATCCCGAATGAAGTCCAAAAAGGTAGCAGTCACATGGCTGCTGTTATAAAGGTCAGAGGAACAGGCAAGATGACTCCAGCAACAACTGAGGGGCAGAAGAACGAAGAAGACAAGAGTAATGTTGGGGATTCACAGCTGACCACTCCTTTACTAACGAAGAAGAAAAAAGAAAGTGTTGTTGCAGACATTGACCGGCACTCAAATCCTTCCTATATCAACCAAACTTCTTCGAGTGAGGCCACAAAAAATGATATATTTTCGGTGGATGCTGAAGATGAAGAGGAGATTGTAGATGAAACGGATGAATATGTTGATGTGCACAAGAGGATACGTGTTGCTGCTGCAGCTGCTGCTTCCTCAATGGCACGCTGTCCATCTATCCGGAGATTGATTGCCCTCAAGGGAGCAGGAGGCCAAACTAAGCAAGGGAGTACCAGTACCCTAAGAAAATCTACTGAAAATGAAAATAATGTTTCAAGGTTCCAAAGGGAACTCTGTTGA 1434 0.4421 MALLQNSQVVFPRWFAISEPSISKTLFLRLPLCPMFSSLSISIPASSPTLRCHSCSFSSNSSAEFSISSPAKVFIKGLPLSTSGGHLVKAFSEFGEVTQVKLLMDKESGKFLGIAYIWFAKEESAQLAVEQMNGKFFDGRFIDVRISRAGSPKNGRNTAPYNLDPSCGSKATPASCNLLLCNAAAMEVIPQAICTRYGLAVGANVIWLVRILMIICYPIAYPIGKILDIVLGHNKALFRRSQLKALVSIHSKEAGKGGELTHDETTIISGALDLTEKVKSLLTVRPETDTPVSAVSVRRVRRVPSDMPLYDIPNEVQKGSSHMAAVIKVRGTGKMTPATTEGQKNEEDKSNVGDSQLTTPLLTKKKKESVVADIDRHSNPSYINQTSSSEATKNDIFSVDAEDEEEIVDETDEYVDVHKRIRVAAAAAASSMARCPSIRRLIALKGAGGQTKQGSTSTLRKSTENENNVSRFQRELC 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0612 477 MobiDBLite consensus disorder prediction 446 477 - -
Lele46g0612 477 MobiDBLite consensus disorder prediction 449 477 - -
Lele46g0612 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 149 IPR000504 GO:0003723
Lele46g0612 477 CDD RRM_SF 73 145 - -
Lele46g0612 477 SMART rrm1_1 72 145 IPR000504 GO:0003723
Lele46g0612 477 Gene3D - 54 158 IPR012677 -
Lele46g0612 477 Pfam Cyclin M transmembrane N-terminal domain 187 263 IPR002550 -
Lele46g0612 477 MobiDBLite consensus disorder prediction 331 391 - -
Lele46g0612 477 Gene3D - 263 350 IPR046342 -
Lele46g0612 477 PANTHER METAL TRANSPORTER CNNM 278 446 IPR045095 GO:0010960
Lele46g0612 477 SUPERFAMILY RNA-binding domain, RBD 62 156 IPR035979 GO:0003676
Lele46g0612 477 ProSiteProfiles CNNM transmembrane domain profile. 187 264 IPR002550 -
Lele46g0612 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 142 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0612 Lele-ChrLele46 4315218 4324959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0612 59 142 Eukaryotic Initiation Factors Gene Family AT1G22760 35.556 2.33e-08 54.7