LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele46g0578	ATGAGAAGGCAAAGGCATTTGGCTTTCGAAGCAGTGACAATCATCTTCGTCAAAAGCACACTCAACTTTTTCCAAAGCATAGAAAATGTGAAGGAGGAACAAAAAGAAAGGCAGATTCCTACAAGGTCATGCAGACCAACGAATGGGTCTTCTGATTCCATTTCAAGTAATGGTAAGTTATCATTCTTCTTTGCTCTGATCATTGTCAATGACTCTTTGGATCATGAGTGTTCTTCTAGGGGTCGTGATATTGAAGAATGCTCAAGTAGTTTAGAACCCAAATCTCCTCCTTCCAAGACCTCTGATTCAGAGAATCAGTCAGATAATCCCCAGTGGCAGGGTTTCTTTGGTTTGTTAAAGAAAGGACCCAAAGTGCGTTTCCAACCAATTCTTCCAGTTATAAGTGTTCCAAAACTCACCAGAAGAAATAGTAAGAGATATAGGGAGAACCAGGTTCCACCTCTAAATTCACCACTGAATAATCCAGCTCTCAAGACAATCTTGGACACTGAATTGTTCTGCTTCAAAGCTTCCTGGAAAAATTTCTCTCACGCTGAGATTGTGACTGCAACTAACAATTTCAGCCATGAGAATGTGATTGGTCAAGGAGGTTATGCTGTGGTTTACAAAGGCAAAATGGAAGATGGGCAATTTGTTGCAATCAAACAGCTCACAAGAGGAACTCTAGAAGAAATGACTGCAGATTTCTTGTCTGAGCTTGGAATTATAGTGCATGTGAACCATCCCAATATTGCTAGATTGATTGGATATGGTGTTGAAGGAGGAATTTTTGTTGTTCTTCAGTTGTCTGCGCATGGCAGCCTAGCATCCATACTTTATGGGCCTCGAGAGAAACTAGATTGGAGCTTAAGGTATAAGATTGCTTTGGGGACTGCTGATGGCCTTCGCTATCTTCATGAGGAATGCCAAAGAAGGATAATTCACAGAGATATTAAGGCTTCTAACATTTTGCTTTCAGAGGACTTTGAAGCTATGGTTAAGCCCAATACAGCAATCTGA	1020	0.4078	MRRQRHLAFEAVTIIFVKSTLNFFQSIENVKEEQKERQIPTRSCRPTNGSSDSISSNGKLSFFFALIIVNDSLDHECSSRGRDIEECSSSLEPKSPPSKTSDSENQSDNPQWQGFFGLLKKGPKVRFQPILPVISVPKLTRRNSKRYRENQVPPLNSPLNNPALKTILDTELFCFKASWKNFSHAEIVTATNNFSHENVIGQGGYAVVYKGKMEDGQFVAIKQLTRGTLEEMTADFLSELGIIVHVNHPNIARLIGYGVEGGIFVVLQLSAHGSLASILYGPREKLDWSLRYKIALGTADGLRYLHEECQRRIIHRDIKASNILLSEDFEAMVKPNTAI	339

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele46g0578	339	MobiDBLite	consensus disorder prediction	84	108	-	-
	Lele46g0578	339	SMART	serkin_6	194	337	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele46g0578	339	ProSiteProfiles	Protein kinase domain profile.	194	339	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele46g0578	339	ProSitePatterns	Protein kinases ATP-binding region signature.	200	222	IPR017441	GO:0005524
	Lele46g0578	339	SUPERFAMILY	Protein kinase-like (PK-like)	179	332	IPR011009	-
	Lele46g0578	339	MobiDBLite	consensus disorder prediction	91	108	-	-
	Lele46g0578	339	Gene3D	Phosphorylase Kinase; domain 1	161	266	-	-
	Lele46g0578	339	Pfam	Protein tyrosine and serine/threonine kinase	197	328	IPR001245	GO:0004672\|GO:0006468
	Lele46g0578	339	FunFam	Receptor-like cytosolic serine/threonine-protein kinase RBK1	170	269	-	-
	Lele46g0578	339	Gene3D	Transferase(Phosphotransferase) domain 1	271	334	-	-
	Lele46g0578	339	PANTHER	OS08G0249100 PROTEIN	57	332	-	-
	Lele46g0578	339	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	313	325	IPR008271	GO:0004672\|GO:0006468
	Lele46g0578	339	MobiDBLite	consensus disorder prediction	32	54	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele46g0578	Lele-ChrLele46	4075152	4077210	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele46g0578	182	329	Receptor kinase-like Gene Family	AT1G53420	47.368	2.47e-38	143

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-VI	Lele46g0578		PK_Tyr_Ser-Thr	1.5e-23	CL0016