Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0565 ATGCCTATAATTCGAAGCCTAATTCACGATATGAGATCCAGGTCGCGCCGTGTGGTGCAGGACGGTTCCTCAATGGAGGAGCCGGTCACTGACGGCTTGAAGCAGAGTTCCTGGGCCCACATGCCTCAGGAGCTTCTCAGGGAGGTTTTGCTCCGAATTGAGGACTCCGAGAGCTCTTGGCCGCCGCGCAAGAGTGTAGTGGCCTGCGCTGGAGTGTGCCGGAGTTGGAGGGAGATCACCAAGGAGATAGTCAAGCCGCCGGAAGTTTCCGCCAAGATCACGTTCCCGATCTCCATTAAGCAGCCTGGCCCTAGAGATCATCTTCTTCAGTGCTTTATAAAGCGCAACCGTTCTTCCCAGACGTATTACTTGTTTCTCAGCTTAACTAGTGCTCTAGCTGATGATGGGAAGTTCCTTTTGGCTGCACGCAAGTGCAGGCGTCCAACCTGCACGGATTATATCATCTCTCTAGATGCTGATGATATGTCAAATGGAAGCTACACCTATATCGGGAAGCTGCGATCAAATTTTCTGGGGACAAAGTTCACAATATATGATGGTCAGCCACCTCATTCAGGCGCAAAAATTTCAAAAAGTCGGTCCACTAGGCTGGTGAATCTGAAGCAAGTTTCACCCCGGGTCCCCACTGGTAACTACCCAGTGGCCCACATTTCATATGAATTAAATGTGTTAGGCTCCAGGGGGCCTAGAAGAATGAATTGTGTCATGGATTCCTTTCCTGCCTCTGCAATTGAACCAGGAGGGGTAGCACCGACACAGACTGACTTTTCTCTAAGCAACATTGATGTGTTTCCTTCATTTCCATTTTTCCGGTCAAAATCAAATCACATGGAAAAATCCGAATCTGGGCCCCTGGGTAATAAAGAAGATGGGGTGCTAGTGTTGAAAAACAAATCTCCGAGGTGGCATGAACAGCTCCAATGTTGGTGCTTAAACTTTCACGGGCGTGTGACAGTAGCTTCGGTGAAAAACTTTCAGCTGGTGGCTTCCCCTCAAGAAAATGGGGTTGCTGGACCAGAACACGAGAAGATTATCCTCCAGTTTGGCAAAGTTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCCATCTCGGCTTTTCAGGCTTTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATCGCTTGTGAATGA 1176 0.4881 MPIIRSLIHDMRSRSRRVVQDGSSMEEPVTDGLKQSSWAHMPQELLREVLLRIEDSESSWPPRKSVVACAGVCRSWREITKEIVKPPEVSAKITFPISIKQPGPRDHLLQCFIKRNRSSQTYYLFLSLTSALADDGKFLLAARKCRRPTCTDYIISLDADDMSNGSYTYIGKLRSNFLGTKFTIYDGQPPHSGAKISKSRSTRLVNLKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMNCVMDSFPASAIEPGGVAPTQTDFSLSNIDVFPSFPFFRSKSNHMEKSESGPLGNKEDGVLVLKNKSPRWHEQLQCWCLNFHGRVTVASVKNFQLVASPQENGVAGPEHEKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0565 391 FunFam Tubby-like F-box protein 95 391 - -
Lele46g0565 391 Pfam F-box domain 38 84 IPR001810 GO:0005515
Lele46g0565 391 Pfam Tub family 100 386 IPR000007 -
Lele46g0565 391 ProSitePatterns Tub family signature 1. 320 333 IPR018066 -
Lele46g0565 391 Gene3D Tubby Protein; Chain A 95 391 IPR025659 -
Lele46g0565 391 PRINTS Tubby superfamily signature 169 193 IPR000007 -
Lele46g0565 391 PRINTS Tubby superfamily signature 218 245 IPR000007 -
Lele46g0565 391 PRINTS Tubby superfamily signature 348 367 IPR000007 -
Lele46g0565 391 PRINTS Tubby superfamily signature 302 319 IPR000007 -
Lele46g0565 391 PRINTS Tubby superfamily signature 153 169 IPR000007 -
Lele46g0565 391 PRINTS Tubby superfamily signature 369 391 IPR000007 -
Lele46g0565 391 PRINTS Tubby superfamily signature 320 336 IPR000007 -
Lele46g0565 391 SUPERFAMILY F-box domain 30 81 IPR036047 GO:0005515
Lele46g0565 391 PANTHER TUBBY-RELATED 24 389 - -
Lele46g0565 391 SUPERFAMILY Tubby C-terminal domain-like 87 391 IPR025659 -
Lele46g0565 391 Gene3D - 31 83 - -
Lele46g0565 391 ProSitePatterns Tub family signature 2. 376 391 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0565 Lele-ChrLele46 3956385 3958866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0565 12 391 TUB Transcription Factor Family AT2G47900 73.629 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele46g0565 Tub 1.8e-112 CL0395