Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0561 ATGGAACGTCTCAGAATTGGCTCTGTTAGGCCATTGCCATTGGTTTCTCAACTTCCGCCTCCTCCTGATGAACCTGTTGTTGCAATGGCCGACGCAGGGAAAACTATCTCCGGCAAGCGTAGTAGACAAAAAGGTTTAGAGAGGAGCGAGAGCCTTGACATTGAGCGTGATCCGAGGTTGAAGATGAGTCATATGTTCGCTGAGCTTCAATCCACCGTTCCTGGTCTCTTTTACAAGGCCACAAGGGAAACGATTGTGAATGAAACAATAAACTACATCAAGGATCTTGAGAAGAAGAAGAAAAGATTGGAAGAACTTAAGGGGTTAATAATGGAACCAGAAGTAGGTGGAGGGAAGTTGATGCTTCCATGTACAGGCAATAAGAATTCCTCCATTACAGTCTCTGTATCTGGAAATGTTGCATTCTTTGGGATTCAATCAAAAGCTCAATTTGGTTTAATCACGTTGATCTTCAAGGTGTTCTACAAGCACAATGCTGAAATTTTGGCGGCAAATGTTTCTGTCAACAACGGAGAATTGACATTGGCAATCACAGCTTTATTAGTTCATGATGGTGATAATAATGATGCAAATGTTGCTGCTGAGAAAATCAAGAGAGAGATTCTGGGTCTGTAG 636 0.423 MERLRIGSVRPLPLVSQLPPPPDEPVVAMADAGKTISGKRSRQKGLERSESLDIERDPRLKMSHMFAELQSTVPGLFYKATRETIVNETINYIKDLEKKKKRLEELKGLIMEPEVGGGKLMLPCTGNKNSSITVSVSGNVAFFGIQSKAQFGLITLIFKVFYKHNAEILAANVSVNNGELTLAITALLVHDGDNNDANVAAEKIKREILGL 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0561 211 Coils Coil 86 106 - -
Lele46g0561 211 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 54 107 IPR044278 GO:0003700|GO:0006355|GO:0009960
Lele46g0561 211 Pfam Helix-loop-helix DNA-binding domain 53 97 IPR011598 GO:0046983
Lele46g0561 211 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 46 96 IPR011598 GO:0046983
Lele46g0561 211 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 52 110 IPR036638 GO:0046983
Lele46g0561 211 ProSiteProfiles ACT domain profile. 142 211 IPR002912 -
Lele46g0561 211 Gene3D - 39 110 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0561 Lele-ChrLele46 3922826 3924107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0561 11 104 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 33.673 5.13e-06 44.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele46g0561 HLH 0.00022 No_clan