Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0560 ATGATTCGAGCTCCTTGTTGCAACGAGATTTACTGGTGTCGTCATTGTCATAACGAGGAAGTGAGCATGTTGAGCAATATCAATGATCGGCATGAACTAGTACGCCAAGGTGTTGAACAAGTTGTTTGTGCAGTTTGTGACACAGAGCAGCCAGTTGCTCAAGTTTGCACAAACTGTGGCGTCATGATGGGAGAATATTTCTGCGAAATCTGCAAGTTCTTCGATGATGATACTGGGAAACAAGAATTTCATTGTGATGATTGTGGGATCTGTAGAGTCGGTGGTCGTCAGAATTATTATCATTGCAAGAAGTGTGGGTCCTGTTATTCAGTTGGCCTGCGTGATAATCATTCTTGTGTAGAGAACTCAATGAGGCATCACTGCCCAATTTGTTATGAGTACCTTTTTGATTCATTGGAAGACACTACTGTAATGAAATGTGGTCACACAATGCATTGTGAGTGTTACCAAGAGATGATAAAGCGTAACAAGTATTGTTGCCCCATATGCTCCAAGTCAGTGATTGATATGTCCAGTACATGGAAGAGAATTGACGAGGAGATTCAAGAAATAGTCATGCCTGAAGATTATCGGGACAGGAAGGTTTGGATACTATGCAATGACTGCAATGACACAACTGAAGTTTACTTCCACATTATTGGGCAAAAATGCGGTCACTGCGGATCATATAATACTCGTAGAATTGCTCCTCCTGTTCTTCCTCAATGA 729 0.4156 MIRAPCCNEIYWCRHCHNEEVSMLSNINDRHELVRQGVEQVVCAVCDTEQPVAQVCTNCGVMMGEYFCEICKFFDDDTGKQEFHCDDCGICRVGGRQNYYHCKKCGSCYSVGLRDNHSCVENSMRHHCPICYEYLFDSLEDTTVMKCGHTMHCECYQEMIKRNKYCCPICSKSVIDMSSTWKRIDEEIQEIVMPEDYRDRKVWILCNDCNDTTEVYFHIIGQKCGHCGSYNTRRIAPPVLPQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0560 242 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 2 239 - -
Lele46g0560 242 SMART ring_2 128 170 IPR001841 -
Lele46g0560 242 Pfam Zinc finger, C3HC4 type (RING finger) 128 170 IPR018957 GO:0046872
Lele46g0560 242 SUPERFAMILY Zinc hairpin stack 64 121 IPR037275 -
Lele46g0560 242 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 202 IPR013083 -
Lele46g0560 242 ProSiteProfiles Zinc finger CTCHY-type profile. 63 127 IPR017921 -
Lele46g0560 242 Pfam CHY zinc finger 2 73 IPR008913 GO:0008270
Lele46g0560 242 SUPERFAMILY CHY zinc finger-like 2 62 IPR037274 GO:0008270
Lele46g0560 242 FunFam RING finger and CHY zinc finger domain-containing protein 1 199 240 - -
Lele46g0560 242 ProSiteProfiles Zinc finger RING-type profile. 128 171 IPR001841 -
Lele46g0560 242 ProSiteProfiles Zinc finger CHY-type profile. 1 61 IPR008913 GO:0008270
Lele46g0560 242 Gene3D - 203 238 - -
Lele46g0560 242 SUPERFAMILY RING/U-box 127 175 - -
Lele46g0560 242 Pfam Zinc-ribbon 175 233 IPR039512 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0560 Lele-ChrLele46 3918091 3921058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0560 2 241 C2H2 Transcription Factor Family AT3G18290 38.776 2.08e-48 169