Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0557 ATGTCCATCACACATCGATTAGGTGGGGCCCACTATCCGACCGGGATGATTATTACTAAACAACACATATGGTTTTGTGAGGGTGGCTTTCTTGTGTCTGGATTTGATATGGGTGGGTGTTTTCCTTGCTTTGGATCATCAAACGAGGACAAAGGGTTGAAGGAAGTAGCAGTCAAGAAGGATTCCTTTAAAGAAGGTCCAATTGTTGCCAAGTCTAACCACACCAATAGGGTTAGCTCAGATAAATCAAAATCGAAAAGTGGCTCTGATCCTAAGAAGGAACCACCTGTTCCCAAGGAACCAACAGCCCATATTGCTGCACAAACATTCACATTCCGAGAACTTGCAGCTGCTACAAAGAATTTTAGGCCAGAATGCTTATTAGGTGAAGGAGGTTTCGGACGTGTCTACAAAGGTCGTCTTGAGAGCACGGGACAAGTAGTTGCTGTAAAACAGCTTGATCGCAATGGCCTTCAAGGAAATCGAGAATTCTTGGTGGAGGTTCTCATGCTTAGCCTCTTGCATCATCCCAATCTTGTCAACTTAATTGGTTATTGTGCTGATGGTGATCAGAGGCTTCTTGTTTATGAATTTATGCCGTTGGGCTCCTTAGAGGATCATTTACATGATCTTCCTCCTGACAAGGAGCCTCTAGACTGGAACACGAGAATGAAAATTGCTGCCGGTGCTGCTAAGGGATTGGAATATTTGCATGACAAAGCAAATCCCCCTGTTATTTACAGAGACTTAAAGTCATCCAATATCCTCCTCGATGAGGGCTATCATCCCAAGCTATCAGATTTTGGGCTTGCGAAGCTTGGTCCTGTTGGTGACAAGACTCATGTATCTACACGAGTAATGGGAACATATGGCTACTGTGCTCCAGAGTATGCCATGACAGGCCAACTCACTCTGAAGTCTGATGTATATAGCTTTGGAGTTGTCTTTCTTGAACTTATTACGGGGCGCAAAGCTATTGACAATACCCGTGCAACCGGAGAGCATAATCTTGTTGCTTGGGCACGGCCTCTTTTTAAAGACCGTAGGAAGTTTCCAAAAATGGCTGATCCCCTACTTCAAGGGCGTTACCCGATGCGAGGACTCTACCAAGCACTTGCAGTTGCAGCCATGTGTTTGCAGGAACAAGCTGCTACAAGGCCTCTTATTGGGGATGTTGTGACTGCTCTCACATACTTGGCCTCACAGACATATGACCCAAATGCAACCAGTCAGAGTAGTAGAGTTGGTTCATCGACCCCAAGGAGCAGGGATGGCCGAAGGAGCATGACAGATGGTGTTATGGAGAGCCCTGATCGTGGACAGAGTGGCTCCCCTTCCACTTATAAAAATTCACCCGATGTCCAGAGGAGAGACAGTGTTGGGAAAGACTTAGGCAGGAGTGAAACTGGGTCAGGAAGAAGATGGGGATTGGATGATGTAGAAAGGCTGGAATCTCAGAGAGACAGCCCTGTAAATACCGGGAGAGCTAGGGAAACTCCAAGGAACCGCGACCTAGACAGAGAACGTGCGGTTGCGGAAGCAAAAGTATGGGGCGAGAATTGGAGGGAGAAAAAGAGGGCTAATGCAGTGGGTAGCTTTGATGCTACAAATGAGTAG 1617 0.4663 MSITHRLGGAHYPTGMIITKQHIWFCEGGFLVSGFDMGGCFPCFGSSNEDKGLKEVAVKKDSFKEGPIVAKSNHTNRVSSDKSKSKSGSDPKKEPPVPKEPTAHIAAQTFTFRELAAATKNFRPECLLGEGGFGRVYKGRLESTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKSSNILLDEGYHPKLSDFGLAKLGPVGDKTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVFLELITGRKAIDNTRATGEHNLVAWARPLFKDRRKFPKMADPLLQGRYPMRGLYQALAVAAMCLQEQAATRPLIGDVVTALTYLASQTYDPNATSQSSRVGSSTPRSRDGRRSMTDGVMESPDRGQSGSPSTYKNSPDVQRRDSVGKDLGRSETGSGRRWGLDDVERLESQRDSPVNTGRARETPRNRDLDRERAVAEAKVWGENWREKKRANAVGSFDATNE 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0557 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Lele46g0557 538 MobiDBLite consensus disorder prediction 77 99 - -
Lele46g0557 538 Pfam Protein kinase domain 127 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele46g0557 538 MobiDBLite consensus disorder prediction 69 103 - -
Lele46g0557 538 SUPERFAMILY Protein kinase-like (PK-like) 98 396 IPR011009 -
Lele46g0557 538 FunFam Serine/threonine-protein kinase PBS1 97 198 - -
Lele46g0557 538 ProSitePatterns Protein kinases ATP-binding region signature. 128 151 IPR017441 GO:0005524
Lele46g0557 538 Gene3D Transferase(Phosphotransferase) domain 1 199 418 - -
Lele46g0557 538 CDD STKc_IRAK 128 397 - -
Lele46g0557 538 Gene3D Phosphorylase Kinase; domain 1 96 198 - -
Lele46g0557 538 MobiDBLite consensus disorder prediction 405 419 - -
Lele46g0557 538 MobiDBLite consensus disorder prediction 435 454 - -
Lele46g0557 538 MobiDBLite consensus disorder prediction 455 488 - -
Lele46g0557 538 SMART serkin_6 122 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele46g0557 538 ProSiteProfiles Protein kinase domain profile. 122 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele46g0557 538 MobiDBLite consensus disorder prediction 405 508 - -
Lele46g0557 538 FunFam Serine/threonine-protein kinase PBS1 199 414 - -
Lele46g0557 538 PANTHER OS07G0668900 PROTEIN 40 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0557 Lele-ChrLele46 3891950 3896751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0557 40 401 Glycoside Hydrolase AT3G07070 65.574 7.90e-172 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lele46g0557 Pkinase 6.1e-46 CL0016