Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0506 ATGGATATTACGGAGGTTGAAGAGAATATGTTCGCAGCAAGTGATGCAAAGTTACATGGGGAATTGTGTAAGGCTCTCTCAGCATCATATTTCAAAGTATTGTCAATATTTCCATCTTTGGAAGCAGCTAGGCCCAGGAGCAAATCTGGGATCCAGGCACTATGTTCATTGCATGTGGCATTGGAGAAGGCCAAGAATGTTCTTCAGCATTGTTCGGAGTGTAGTAAGCTTTATTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAAGCTAAATGTGCTCTTGAAAATAGTCTTAAAAGGGTGGAAGACATTGTACCACAATCTATTGGATGTCAGATTGAAGAGATTGTGAGTGAACTTGAAAGTATGGCGTTGGCACTTGACCCAATGGAGAAGCAAATTGGTGATAATTTAATTACTTTGCTCCAGCAGGGGAGAAAGTTTAACGACACTACTGATAGTAGTGAGCTTGAATGTTTTCACCAGGCCGCTACTAGACTAGGAATCACTTCTTCTAGAGCAGCTCTTACTGAAAGAAGAGCTCTCAAGAAACATATCGAAAGAGCTCGGGCTGAAGATGACAAGCGTAAGGAATCAATTGTTGCATATCTTTTACACCTTATGAGGAAATACTCTAAGTTATTTAGAAGTGAGTTTTCAGACGATAATGATTCTCAGGGTTCGACTCCTTGTTCTCCCACTGTTATGGGATCTATGGAAGATGGTGTTGCTGGTGGTCATTACCTGGCCTTTGACCGACAGCTCTCTAAACTTAGTTCTTTTAATTTTAAGCCAAATAATAGAAGATCAGCGCAAATGCCCCTTCCACCTGAGGAGCTAAGGTGTCCCATATCTCTGCAACTTATGTATGATCCTGTTATAATTGCTTCTGGGCAAACATATGAGAGGGTTTGCATAGAGAAATGGTTCTGTGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTGCGCATCTATCATTGACCCCCAATTACTGTGTCAAGGGTCTTGTTGCTAGTTGGTGCGAACAAAATGGAGTTCCTGTTCCTGATTGCCCTCCGGAATCTCTTGACTTTAACTACTGGAGATTAGCATTATCTCAGTCTGAATCAACAAATTCGAGATCTGTGAACAGTGTGAATTCTTGTAAATTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGACGGGGGTCTCACATGAAGCTGGTGAAAATGGAACTGAAAGTGTGCCTGCACAAGAGGAAGATACTGAGCAGTATCTTAGTTTTCTGAAAGTCTTGACTGAAGGGAACAGTTGGAAAAGGAAATGCAAAGTGGTAGAAAGGTTAAGGCTTCTGCTGAGGGATGATGAAGAAGCCAGGATTTTTATGGGGGCGAATGGGTTTGTTGAAGCACTTCTGTGTTTTCTGCAGTCAGCAGTGTCTGAAGGGAATGCAACAGCTCAAGAAAGTGGAGCAATGGCCCTCTTTAACCTTGCTGTGAATAACAACAGGAATAAGGAGATCATGTTAGCAGCAGGAGTACTATCATTGCTAGAGGAAATGATCTCTAATTCCTTCTCTTACGGCTGCGCGACGGCCCTCTATCTGAATCTCTCTTGCCTTGAAGAAGCCAAACCTATGATTGGCAGGAGTCAGGCTGTCCAGTTCCTCATTCAGCTCCTCTGTCAACCTGACGTTGAAGTCCTTTGCAAGCAAGATTCCCTTCATGCACTGTATAATCTATCCACTGTACCCTCCAATATTCCAAACCTCCTTTCATCTGGCATCATCAATGGCCTTCAATCTCTCCTTGCGGGCCAGGGTGACTCTATCGGGACAGAAAAATGCATAGCTATTTTGATCAATTTGGCTTCTTCTCAGTTGGGAAGGGAGGAAATGATATCATCTCCGGGGCTCATAGGCACGTTGGCTACCATATTGGACACCGGTGAGCTCGTAGAGCAAGAGCAAGCTCTATCTTGTCTACTAATTTTATGCAACGGGAACGACATATGTAGCCAGATGGTCCTGCAAGAAGGCGTAATACCCGCATTGGTGTCATTATCGGTGAATGGTACCTCAAGAGGGAGAGAGACAGCTCAGAAACTCTTGATGCTGTTTAGAGAGCAACGACAGCGAGACAATTCGCCTCCTAAGACACAACAGTTCCCGCCCGAAACTAGTGATATAGAGATGCCGCCTCCTGAAACAAAACCGCTATGTAAGTCATTGCCTAGGAAAAAAATGGGGAGGGCACTTAGCTTCTTATGGAAAACCAAGAGCTATTCTGTTTACCAGTGTTAG 2298 0.436 MDITEVEENMFAASDAKLHGELCKALSASYFKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALENSLKRVEDIVPQSIGCQIEEIVSELESMALALDPMEKQIGDNLITLLQQGRKFNDTTDSSELECFHQAATRLGITSSRAALTERRALKKHIERARAEDDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQGSTPCSPTVMGSMEDGVAGGHYLAFDRQLSKLSSFNFKPNNRRSAQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFCDGHNTCPKTQQKLAHLSLTPNYCVKGLVASWCEQNGVPVPDCPPESLDFNYWRLALSQSESTNSRSVNSVNSCKLKGVKVVPLEETGVSHEAGENGTESVPAQEEDTEQYLSFLKVLTEGNSWKRKCKVVERLRLLLRDDEEARIFMGANGFVEALLCFLQSAVSEGNATAQESGAMALFNLAVNNNRNKEIMLAAGVLSLLEEMISNSFSYGCATALYLNLSCLEEAKPMIGRSQAVQFLIQLLCQPDVEVLCKQDSLHALYNLSTVPSNIPNLLSSGIINGLQSLLAGQGDSIGTEKCIAILINLASSQLGREEMISSPGLIGTLATILDTGELVEQEQALSCLLILCNGNDICSQMVLQEGVIPALVSLSVNGTSRGRETAQKLLMLFREQRQRDNSPPKTQQFPPETSDIEMPPPETKPLCKSLPRKKMGRALSFLWKTKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0506 765 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lele46g0506 765 Coils Coil 175 195 - -
Lele46g0506 765 Gene3D - 426 602 IPR011989 -
Lele46g0506 765 PANTHER U BOX DOMAIN-CONTAINING 28 710 - -
Lele46g0506 765 CDD RING-Ubox_PUB 283 325 IPR045210 -
Lele46g0506 765 SUPERFAMILY ARM repeat 428 705 IPR016024 -
Lele46g0506 765 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Lele46g0506 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 352 IPR013083 -
Lele46g0506 765 SUPERFAMILY RING/U-box 277 357 - -
Lele46g0506 765 Gene3D - 605 711 IPR011989 -
Lele46g0506 765 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lele46g0506 765 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Lele46g0506 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Lele46g0506 765 MobiDBLite consensus disorder prediction 707 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0506 Lele-ChrLele46 3496355 3500143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0506 1 764 U-box Gene Family AT1G24330 66.624 0.0 1030