Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0503 ATGGCTTTCGGGTTGGACTCTCACGATGTCTCCGCCTTCAAATTCCTGTTGTTCATGGCGGTCTTTTACGGTCTTTTGTCGTTGCTGGCTCATTCTGTCACTCATATGAAGTTTATTAAGCCACTTGAATTGGACGCCCCTGCCGATCGCTTTTCGGAAGCCAGAGCCATCGAACATGTACGAGTCTTGTCGAAAGAGATCGACGGTCGTCAAGAAGGACGTCCTGGATTGAGAAAAGCTGCTGAATATATCAAGGGTCAGTTAGAAGTAATAAAGGAGCGAGCTAGGTCCAGTGTCAGAATTGAGATTGAGGAAACCACTGTAAATGGCTCCTTTACTATGATCTTTTTGCAGCATGGCATAGCTCTGGGATACAGAAACCATACAAATATTATTATGAGGATATCATCTAAAGATTCGAAAGACACTGATCCATCAGTTTTAGTGAATGGACATTTTGATAGTCCACTTGGTTCCCCAGGCGCTGGAGATTGTGGTTCATGTGTTGCATCAATGCTGGAATTGGCACGACTAATTGTGGACTCTGGCTGGGCTCCAACCCGCCCTGTTATATTCCTCTTTAATGGCGCCGAGGAACTCTTCATGTTGGGTGCACATGGGTTCATGAAGACACATAAGTGGCATGATACAATAGGAGCTGCTATAAATGTGGAGGCATCTGGGACTGGAGGACCTGATTTAGTTTGCCAATCTGGACCTGGTTCTTGGCCTTCTAATGTCTATGCTGAAGCAGCAATATACCCTATGGCTAATAGTGCAGCGCAGGATGTTTTTCCTGTTTTTCCTGGAGATACAGATTACCGGATATTTTCCCAAGACTATGGGAATATTCCTGGGCTTGACATCATCTTTCTTCTTGGTGGTTATTTTTACCATACCTCCTATGATACAATAGAGAGATTGCTACCTGGAAGCATCCAAGCACGTGGTGACAATTTGTTCAGCATAATCAAAGCTTTTGCTAATTCCTCTAAGCTAAGAAATATATATCAAACAAATTCTAGTGAAGTTACTGCAAGCACATATGAAGATGAGCGGGCAGTTTTCTTTGACTATCTCTCATGGTTTATGATATCCTATTCCAGAAAAGTAGCTTGGATTCTTTATAGTGTTCCTATCTTCACCTTCTTTATCATGCCTTTCTTCTTGACGCATAGTCGATCACGCTTATGGTCAGCAACTTCTTGTGATTTTATGAAAGGCTTTCTAATTCATACTGTTGGGATTATATTGGGGATTGTTGTTCCGATCATATTTTCTTTAATTAAAATTCAGTTCTCTTCTCAGACCATGAATTGGTTTGCACGCCCGTACTTGGCTTTCATGATGTATATACCCGGCTCACTTATTGGTCTTTTAATTCCGAGAATTGTTTGGAGACACTTTCCCCTGACTCAAGATATTTTAGTTGCCAAGACTTCAAAAGAGGCACTATCTGATGAAGGAAGGTTCTGGGGAGCATTTGGATTTTATGCTGTATTTACTGTGGCTTACCTTGGTGCTGGGTTGAATGGAGGTTTCTTAACTTTCGTGATGTCAACTTTCATGCTTACCGCATGGATATCGTTCAGCTTATCAGTGAAATCCTGTGGACGCCAATCTCTCAGGTATGCTTTCATTCCATTCCTGTCAACAATATTTTACATGATACCTCTGGTTCCGTGCCTTGCATACACCGTTTATTTTGGTGGCTTTTTATCTGAGTTTGTAATTGAAAAGATGGGAATGATGGGTGCTCTTCCTCTGCCCTGGGGGGAATACGTGCCTGACTTTGCTGTAGCTGCACTAGTTGGAATTGTAACTGGTTGGTGCTTGGGCCCTCTCTTACCTATTTGTGGCCATTGGTTAGCCAGAAAATCAATCTTGCAATTTCTGCTGCATCTTAGTGTGCTTGCTTTGGCATTGTCATCTCAATTCTTTCCTTACAGCATTTCTGCACCTAAGAGGGTAGTTTTCCAACATACTTTTCATACTGCAGGCTCAAGTGAGATTGTGGAAGCCACTTTTGATTTTTCTGTGGTGGATTCCAATTCTTTACTTTTCCTTTTCAGACACGCGCCTGAAGTAGCAAGGGAGTTGGAAGTTCCTTCTGAGTTTTCATTTCAATCTGGAATGATGTCTAAACGCCAAAATTGGATGGCAAGTTTCTTCTGCGTGGAAGAAATTAATGGCGAGGCATTTTTGTTGCAGGCAATTTTTCCTGTTTCTTTTCTCTTTTCAAATAGCCTGAAGTTCCCTGCTAAAGGGGATGATATATTGGAGAAGTACGAATCTTTTCCCAATTTGTCTGTTCTGTCTTGTACTAACTCTACAAAGGGACTGAAGAGAGTTTACTTGGAGCTTTCTTTAGGTTCCTTAGAAGAGGTTTGGGTTGCTGTTCTCAACATAACTGGTCCTTTATCCAGTTGGTCATTTGCTGATAATGTTCTTCCAGTCGTATCTTATAAGAAGAACAAATCACGGAGCAATTTTCTTCTACACACCGAAGGCCATCGTCGAGCCGAGAGAGAAGCTCCCATAACAGGCGCCATGGTGAAGTACTCCAGGGAGCCGGACAATCCTACTAAGTCCTGCAAGGCTAGAGGCTCCGACCTCAGAGTTCATTTCAAGAATACTCGAGAGACTGCCTTTGCCATCAGGAAGTTGCCCTTGGCAAAGGCTAAGAGGTACTTGGAGGATGTTCTAGCACACAAACAAGCCATTCCATTCCGAAGGTTTTGTGGTGGAGTTGGTAGGACAGCCCAAGCTAAGAATAGACACTCCAATGGGCAAGGGCGCTGGCCTGTTAAATCAGCTAAATTCATTCTAGACTTGCTTAAGAATGCTGAGAGTAATGCTGATGTGAAAGGTTTGGAAGTCGATGCCCTCTACGTTTCCCATATCCAGGTTAATCAAGCACAGAAGCAAAGACGCCGCACCTACCGAGCTCACGGAAGGATCAACCCTTATATGTCATCTCCCTGCCATATTGAGCTTATATTATCTGAGAAGGAAGAACCTGTGAGGAAGGAGGCGGAGACCCAGTTGGCAACTAGCAAGAAAGATTAA 3069 0.4304 MAFGLDSHDVSAFKFLLFMAVFYGLLSLLAHSVTHMKFIKPLELDAPADRFSEARAIEHVRVLSKEIDGRQEGRPGLRKAAEYIKGQLEVIKERARSSVRIEIEETTVNGSFTMIFLQHGIALGYRNHTNIIMRISSKDSKDTDPSVLVNGHFDSPLGSPGAGDCGSCVASMLELARLIVDSGWAPTRPVIFLFNGAEELFMLGAHGFMKTHKWHDTIGAAINVEASGTGGPDLVCQSGPGSWPSNVYAEAAIYPMANSAAQDVFPVFPGDTDYRIFSQDYGNIPGLDIIFLLGGYFYHTSYDTIERLLPGSIQARGDNLFSIIKAFANSSKLRNIYQTNSSEVTASTYEDERAVFFDYLSWFMISYSRKVAWILYSVPIFTFFIMPFFLTHSRSRLWSATSCDFMKGFLIHTVGIILGIVVPIIFSLIKIQFSSQTMNWFARPYLAFMMYIPGSLIGLLIPRIVWRHFPLTQDILVAKTSKEALSDEGRFWGAFGFYAVFTVAYLGAGLNGGFLTFVMSTFMLTAWISFSLSVKSCGRQSLRYAFIPFLSTIFYMIPLVPCLAYTVYFGGFLSEFVIEKMGMMGALPLPWGEYVPDFAVAALVGIVTGWCLGPLLPICGHWLARKSILQFLLHLSVLALALSSQFFPYSISAPKRVVFQHTFHTAGSSEIVEATFDFSVVDSNSLLFLFRHAPEVARELEVPSEFSFQSGMMSKRQNWMASFFCVEEINGEAFLLQAIFPVSFLFSNSLKFPAKGDDILEKYESFPNLSVLSCTNSTKGLKRVYLELSLGSLEEVWVAVLNITGPLSSWSFADNVLPVVSYKKNKSRSNFLLHTEGHRRAEREAPITGAMVKYSREPDNPTKSCKARGSDLRVHFKNTRETAFAIRKLPLAKAKRYLEDVLAHKQAIPFRRFCGGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADVKGLEVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVRKEAETQLATSKKD 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0503 1022 ProSitePatterns Ribosomal protein L22 signature. 977 1001 IPR018260 GO:0003735|GO:0005840|GO:0006412
Lele46g0503 1022 CDD M28_Fxna_like 48 367 - -
Lele46g0503 1022 CDD Ribosomal_L22 865 1001 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lele46g0503 1022 TIGRFAM uL22_arch_euk: ribosomal protein uL22 854 1004 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lele46g0503 1022 FunFam Endoplasmic reticulum metallopeptidase 1 45 343 - -
Lele46g0503 1022 SUPERFAMILY Zn-dependent exopeptidases 40 330 - -
Lele46g0503 1022 PANTHER METALLOPEPTIDASE M28 FAMILY MEMBER 41 720 IPR045175 GO:0006508|GO:0008235
Lele46g0503 1022 Hamap 50S ribosomal protein L22 [rplV]. 850 1004 IPR005721 GO:0003735|GO:0006412|GO:0015934
Lele46g0503 1022 Pfam Ribosomal protein L22p/L17e 867 1002 IPR001063 GO:0003735|GO:0005840|GO:0006412
Lele46g0503 1022 SUPERFAMILY Ribosomal protein L22 851 1004 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lele46g0503 1022 FunFam 60S ribosomal protein L17 851 1022 - -
Lele46g0503 1022 Gene3D Zn peptidases 45 345 - -
Lele46g0503 1022 Gene3D Ribosomal protein L22/L17 851 1022 IPR036394 GO:0003735|GO:0005840|GO:0006412
Lele46g0503 1022 Pfam Peptidase family M28 130 320 IPR007484 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0503 Lele-ChrLele46 3444941 3465589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0503 851 1021 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.135 2.79e-106 327