Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0486 ATGGCGACTCAGATGAGCAAGAAGAGAAAGTTCGTTGCCGATGGCGTTTTCTTCGCCGAGTTGAACGAGGTTTTGACCCGAGAGCTTGCCGAGGATGGTTACTCTGGTGTTGAGGTTAGAGTTACTCCGATGCGCACTGAGATCATTATCAGAGCCACGCGAACCCAGAATGTGCTTGGTGAGAAGGGGAGGAGAATCAGGGAACTGACCTCGGTTGTACAGAAGAGGTTTAAATTTCCGGAGAACAGCGTGGAGCTGTATGCTGAGAAGGTGAACAACAGGGGTCTTTGTGCTATTGCTCAGGCCGAGTCTCTTCGCTATAAGCTTCTTGGTGGTCTCGCCGTGCGGAGGGCATGCTATGGTGTTTTGAGATTTGTCATGGAAAGTGGAGCAAAGGGATGTGAGGTCATTGTAAGTGGAAAACTGAGGGCTCAGCGTGCCAAATCCATGAAGTTCAAGGATGGATATATGATTTCATCTGGTCAGCCAGTCAAGGACTACATTGACTCTGCAGTAAGACATGTACTGCTCAGACAGGGAGTTCTTGGCATTAAGGTCAGGATCATGCTTGATTGGGACCCCAAGGGAAAGCAAGGTCCTAAAACTCCTCTTCCTGATATCGTCACAATCCATCCTCCAAAGGAGGAAGAAGAATACAGCCGGCCTGCTGCTGTTGTGGCAGCTGATATCGATGTCCCCATGGCTTGA 708 0.4958 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVRIMLDWDPKGKQGPKTPLPDIVTIHPPKEEEEYSRPAAVVAADIDVPMA 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0486 235 CDD 40S_S3_KH 15 95 - -
Lele46g0486 235 TIGRFAM uS3_euk_arch: ribosomal protein uS3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Lele46g0486 235 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Lele46g0486 235 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Lele46g0486 235 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Lele46g0486 235 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 198 - -
Lele46g0486 235 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
Lele46g0486 235 Pfam KH domain 20 93 IPR004044 GO:0003723
Lele46g0486 235 Gene3D - 1 91 IPR015946 -
Lele46g0486 235 Gene3D - 93 230 IPR036419 -
Lele46g0486 235 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Lele46g0486 235 FunFam 40S ribosomal protein S3 1 92 - -
Lele46g0486 235 FunFam 40S ribosomal protein S3 93 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0486 Lele-ChrLele46 3307346 3309470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0486 1 235 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 87.660 4.57e-153 423