Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0485 ATGCCGGTGAATCTCACGGCCAACGCGATCCCGGCGATTGTCGCCGGCGACGTGAACTCGAAGCCGCTCGTCCAGGTCCTCGACATCAAGTTGCTTTCTAATTCGCAGCAGGAGAGGTACCGGCTTCTGCTTTCCGATTCCGCTTCCACTCAGCACGCTATGCTCGCGACTCAGCTGAACGACCAAGTTAGAACCGGACGAGTCAAGAAAGGTTCCGTCGTTCAGCTGGTTGAGTACATTTGCAGTCAAATTCAGAACCGCAAGATCATTGTGGTGCTCAACATGGAAACTATAATTCCAGAGTGTGAGATTATTGGGAACCCAAACTCATTCGTGGAATCTGATTCAACAGCTCAGAAAGCATTGTCTAATAACAATATGCAGAACTCATCCAGGCTTAATAATAATCGTCTGCCTGCTCAAAATTCAAGTCATGAGCAGAATTTCAGACCAACTGTTCAACCTCCATTCCGACCACCACCAGTTTACAGAGGTCATGGTGCAATTATGAAGAATGAAGCACCGGCACGGATCATTCCTATTGCTGCTTTAAATCCTTATCAAGGCCGGTGGGCTATTAAGGCAAGAGTAACTGCAAAAGGGGATCTCCGCCGCTATAATAATGCTCGAGGAGATGGAAAAGTGTTCTCTTTTGATCTTCTTGACTCTGATGGAGGTGAAATACGAGTAACTTGCTTCAATGCTGTTGTTGACCGATTTTATGATGTAATTGAGGTTGGTAGAGTTTACTTGATATCCAAAGGTAGCTTAAAACCTGCACAGAAGAATTTCAATCATTTGAAGAATGACTGGGAAATCTTCCTGGACTCTAATTCATCTGTGGAGCTTGGCCCAGATGAAGATGCTTCAATACCCAGACAGCAATTCTCTTTTAGGCCTATCAGTGACATTGAGAATGCCGAAAGTAACTGCATACTTGATGTTATTGGGGTTGTGATATCTGTAAATCCCTCTGTTCCCATCTTGAGGAAGAATGGAATGGAAACTCAAAGACGAATTCTGAATGTAAAGGACAAGTCTGGCAGGAGTGTTGAGCTCACCCTTTGGGGTGATTTCTGCAAGAGGGAAGGTCAAAAGCTTCAAGAGATGGTTGATGGTGGGTTTTTCCCAGTTCTGGCAATCAAATCTGGGAGGGTTAATGACTTTAGTGGAAAATCTATAGGAACCATTTCTTCTACCCAACTCTTCATTAACCCAGATTTTCCTGAGGCTTATAGATTAAGAGACTGGTTTGATCAAGGGGGGAAAGATTCAGCTTCTTTGTCCATTTCTAAGGACATTACGCCTGGAGGGCCTAAGAATGAGATACGTAAAACTGTGTCTCAGATCAAAGATGAAGGCCTGGGGCGATCAGATAAGCCAGACTGGATAACGGTGAGGGCAACCATATCTTTCATCAAGACAGATACATTTTGTTACACAGCTTGCCCACTGATGATCGGAGACCGACAGTGCAGTAAAAAAGTGACTAGGTCAGGAAGCACTAAGTGGCAATGCGATAGATGCAATCAAGAGTTTGAGGATTGCGAGGAAATCTTGGGTTGCTCAGCAAAGGAGCTGTACTTATTGAAGTATGAAGAGCAGGATGATGATAAGTTTGAGAACATGATCCGTAGTAAACTCTTCAACCAGTTTGTGTTTCGGCTCAAAGTTAAGGAGGAATTGTATGGTGATGAACAGAGGGTGAAGATTACAGTGGTTAAGGCAGATAAAGTGGATTATTCTTCAGAGAGTAGATACATGCTAGATTTGATTTCAAAATTTTGTAAGCAATGTTACATAATCTTAGAAATACTTTGCTTCACGGAGAATTCAATTATTGCCTACAGGTTGATCCGTCACCGGAACATGGAATTTAAGAATTGGAAAAAGTTTCAGCTCAGTTGTTGGAGAAGAAGTGTGACACATTACACACAACAGAGTTCATTACTGAATAACAATGCACAGTGGACATAG 1977 0.4305 MPVNLTANAIPAIVAGDVNSKPLVQVLDIKLLSNSQQERYRLLLSDSASTQHAMLATQLNDQVRTGRVKKGSVVQLVEYICSQIQNRKIIVVLNMETIIPECEIIGNPNSFVESDSTAQKALSNNNMQNSSRLNNNRLPAQNSSHEQNFRPTVQPPFRPPPVYRGHGAIMKNEAPARIIPIAALNPYQGRWAIKARVTAKGDLRRYNNARGDGKVFSFDLLDSDGGEIRVTCFNAVVDRFYDVIEVGRVYLISKGSLKPAQKNFNHLKNDWEIFLDSNSSVELGPDEDASIPRQQFSFRPISDIENAESNCILDVIGVVISVNPSVPILRKNGMETQRRILNVKDKSGRSVELTLWGDFCKREGQKLQEMVDGGFFPVLAIKSGRVNDFSGKSIGTISSTQLFINPDFPEAYRLRDWFDQGGKDSASLSISKDITPGGPKNEIRKTVSQIKDEGLGRSDKPDWITVRATISFIKTDTFCYTACPLMIGDRQCSKKVTRSGSTKWQCDRCNQEFEDCEEILGCSAKELYLLKYEEQDDDKFENMIRSKLFNQFVFRLKVKEELYGDEQRVKITVVKADKVDYSSESRYMLDLISKFCKQCYIILEILCFTENSIIAYRLIRHRNMEFKNWKKFQLSCWRRSVTHYTQQSSLLNNNAQWT 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0485 658 Gene3D - 177 286 IPR012340 -
Lele46g0485 658 Pfam Replication factor-A protein 1, N-terminal domain 5 98 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele46g0485 658 FunFam Replication protein A subunit 177 286 - -
Lele46g0485 658 Pfam OB-fold nucleic acid binding domain 192 264 IPR004365 GO:0003676
Lele46g0485 658 SUPERFAMILY Nucleic acid-binding proteins 444 595 IPR012340 -
Lele46g0485 658 FunFam Replication protein A subunit 4 112 - -
Lele46g0485 658 SUPERFAMILY Nucleic acid-binding proteins 1 107 IPR012340 -
Lele46g0485 658 CDD RPA1_DBD_A 180 283 - -
Lele46g0485 658 Pfam Replication protein A OB domain 301 405 IPR031657 -
Lele46g0485 658 Gene3D - 516 596 IPR012340 -
Lele46g0485 658 Gene3D - 431 515 IPR012340 -
Lele46g0485 658 MobiDBLite consensus disorder prediction 126 151 - -
Lele46g0485 658 MobiDBLite consensus disorder prediction 126 156 - -
Lele46g0485 658 Gene3D - 4 112 IPR012340 -
Lele46g0485 658 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 4 517 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele46g0485 658 Pfam Replication factor-A C terminal domain 514 587 IPR013955 -
Lele46g0485 658 Gene3D - 289 429 IPR012340 -
Lele46g0485 658 SUPERFAMILY Nucleic acid-binding proteins 295 423 IPR012340 -
Lele46g0485 658 SUPERFAMILY Nucleic acid-binding proteins 177 290 IPR012340 -
Lele46g0485 658 CDD RPA1_DBD_B 312 419 - -
Lele46g0485 658 CDD RPA1_DBD_C 447 594 IPR013955 -
Lele46g0485 658 CDD RPA1N 9 99 IPR007199 GO:0003677|GO:0005634|GO:0006260
Lele46g0485 658 PANTHER REPLICATION FACTOR A 1, RFA1 191 573 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Lele46g0485 658 FunFam Replication protein A subunit 290 429 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0485 Lele-ChrLele46 3302919 3306101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0485 26 594 Core DNA Replication Machinery Family AT2G06510 66.667 0.0 847