Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0479 ATGAGGAGCCATATCCAGTTTCTCTTAGGCCTCGCGCTCTTCAGCATTCTCTGCCTCGTTCAAACCAAATCCATCATCGAACCCTGTTCCTCCTCTGACTCCTGTTTCTCCCTTCTCTCCTTCGTCGTCACCTGGGACTCCAAGCTCTCTGAAGTCGCCTCGCGATTCCAGGTCAATGTCTCCGACATCCTCGCAGCCAACTCCGTCTTCCCGATATCGCAGAAACTCTCCGATCAGATCATCAGATCCAAATCCGTCGTGAAGATCCCCATCTCGTGCGCTTGCATCGACGGAATACGAAGATCTAAGCCCATAATGTACACCGTGCAAGCATCGGACACACTGGAGACCATATCGGATGGATTCGGCGGGCTGGTGAGTGCCGACCAGATGGCGACGGTGAACAGCATAAATGCGACGAATCGCTTAACGAACGGAGGCAGGTTGGTGATATCGTTGCCGTGTACTTGCTTGAATAACGTGAGGAACGGTGAAACGACAGTGTATATGTCGTATGTGGTGAGAGAGGGAGAAAACTTGAGGAGTATAGCGTCGGGTTCAAAAACGACAGTGTCGGATTTGGAAGCCGTCAATGGATTGAGTTACGACGCCGTCGAACCAGGAGATGTCATTGCCATCCCCATTGCAGCATGTTCTTCAGCAACACTGAATTGGTACAACGAGAGTCTCATTGTCCCTAATGGCTCTTACGCGCTCACTGCCTCTGACTGCATCAAATGCTCTTGTGGCCCCATTGATCTCAGGCTGCAATGTTATCCATCTGGTCTGGCTGTTCCCTGCTTCAACTTACAGTGCAAGGATTCCAATCTTGTAATTGGCGACCAATATGTAAAATATTCCAAACCTGCCTGTAATGTCACCCAGTGTCTTTATCGTGGCCACCGAGGGGGAAAGATTCTCAGAAGTGTGTCCAGAATTTCTTATCTCAAATGCCCGGAAAATCTGACTTATAGTGCAGAATCTCCTTGGCCATCAATAAATTTAAATCCTGCAATAACTCCATTTGGGGAACTTTCTCCATATCCCTCACATAGTCCACCAGTTTCTGATTCTTCAATGCGCACCACTCATGTTTCAACCATCAGATTGCTCCTACTGCTCCCTTGGATTTAAATACATTACAGTTCACAGTTTCTTGAAATGAAAAATCAAACAACTCTCAGAGCCTCTCCCATACAGTCTACAGCCATTGTTAGGCATTTTTGTAGATTTGCAACCAGAATCCGCCATGATCTCCGACCAGAAGTAGAAATGCTTACATGCATAGCTCGTCCAAAGAAACTCGGGCATGAGTCACTGAATCAGCCCGATGAATCGGATTCTACCAACTCAAGCGCCGCCAAGAGTCAAGCTACTAAATCCCTCACTTCTCAGCTCAAGGATATTGCGTTGAAGGCATCCGGAGCTTACAAGCATTGCGGTCCCTGCAACGGACCACAGTCACAGAATCGACTCAGGGCCAGTATTGAGTCAGACGCGGAGTCGGATCGGTTCCGATGGTCCTACCGGCGAACCGCGAGCTCAAACTCGGCAACGACGAGGACATGGGGGAAGGAGATGGAAGCGAGGCTGAAGGGGATTTCGAGTGGGGAGGGGACGCCGAACTCTGCCAGTGGACGGCGGGTGGAGCCGGTGGTGCTGTTCGTCGAAGAGAACGAACCTAAGGAGTGGGTGGCGCAGGTGGAGTCCGGAGTATTAATCACCTTTGTATCCCTTCCGAGCGGAGGGAATGATTTGAAGCGAATCCGGTTCAGTCGGGAAATGTATAACAAATGGCAAGCGCAAAAATGGTGGGCAGAGAACCATGAAAGGGTCATGGAACTTTACAACGTTCAGAAGCTTAATCGCCAAGCCTTCCCTCTTCCAACACCACCAAGATCTGAAGATGAGCTCTCAAAACTTGAATCAGCAGAAGATATCCCAGTGACACCTCCACTAACCAAAGAACGATTACCTCGTAATCTAAATCTCCCAACAGGGATTGGAACGGGATACTCATCATCGGATTCTTTTGACCATCGTTCAATGCAATCCCGCCACCATCATGACTCGGGTGGCCTCAACTCAACCCCTAAATTCTCAACCATAAGCACGGCCAAGACAGAAGCATCATCCATAGACGCCTCCATCAGAAGTAGCTCATCCAGAGAGGCTGATCCTTCAGGTGATATATCAATCAGCAATGCCAGTGATCAAGACACTGAATGGGTTGAACAGGATGAACCTGGTGTTTATCTTACTATCAGAGCATTGCCAGGTGGCAAAAGGGAGCTAAGACGAGTCAGATTCAGCCGAGAAAAATTTGGGGAGGTGCATGCTAGATTATGGTGGGAAGAGAATCGAGCGAGGATTCATGAACGATACTTGTGA 2391 0.4902 MRSHIQFLLGLALFSILCLVQTKSIIEPCSSSDSCFSLLSFVVTWDSKLSEVASRFQVNVSDILAANSVFPISQKLSDQIIRSKSVVKIPISCACIDGIRRSKPIMYTVQASDTLETISDGFGGLVSADQMATVNSINATNRLTNGGRLVISLPCTCLNNVRNGETTVYMSYVVREGENLRSIASGSKTTVSDLEAVNGLSYDAVEPGDVIAIPIAACSSATLNWYNESLIVPNGSYALTASDCIKCSCGPIDLRLQCYPSGLAVPCFNLQCKDSNLVIGDQYVKYSKPACNVTQCLYRGHRGGKILRSVSRISYLKCPENLTYSAESPWPSINLNPAITPFGELSPYPSHSPPVSDSSMRTTHVSTIRLLLLLPWIXIHYSSQFLEMKNQTTLRASPIQSTAIVRHFCRFATRIRHDLRPEVEMLTCIARPKKLGHESLNQPDESDSTNSSAAKSQATKSLTSQLKDIALKASGAYKHCGPCNGPQSQNRLRASIESDAESDRFRWSYRRTASSNSATTRTWGKEMEARLKGISSGEGTPNSASGRRVEPVVLFVEENEPKEWVAQVESGVLITFVSLPSGGNDLKRIRFSREMYNKWQAQKWWAENHERVMELYNVQKLNRQAFPLPTPPRSEDELSKLESAEDIPVTPPLTKERLPRNLNLPTGIGTGYSSSDSFDHRSMQSRHHHDSGGLNSTPKFSTISTAKTEASSIDASIRSSSSREADPSGDISISNASDQDTEWVEQDEPGVYLTIRALPGGKRELRRVRFSREKFGEVHARLWWEENRARIHERYL 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0479 796 Pfam Transcription factor BRX N-terminal domain 447 483 IPR027988 -
Lele46g0479 796 ProSiteProfiles BRX domain profile. 741 796 IPR013591 -
Lele46g0479 796 MobiDBLite consensus disorder prediction 626 745 - -
Lele46g0479 796 ProSiteProfiles LysM domain profile. 170 213 IPR018392 -
Lele46g0479 796 Gene3D LysM domain 101 159 IPR036779 -
Lele46g0479 796 Pfam LysM domain 172 214 IPR018392 -
Lele46g0479 796 Pfam LysM domain 49 90 IPR018392 -
Lele46g0479 796 Pfam LysM domain 107 151 IPR018392 -
Lele46g0479 796 Gene3D LysM domain 160 223 IPR036779 -
Lele46g0479 796 SUPERFAMILY LysM domain 170 214 IPR036779 -
Lele46g0479 796 ProSiteProfiles BRX domain profile. 562 617 IPR013591 -
Lele46g0479 796 SMART LysM_2 171 214 IPR018392 -
Lele46g0479 796 SMART LysM_2 40 90 IPR018392 -
Lele46g0479 796 SMART LysM_2 106 152 IPR018392 -
Lele46g0479 796 MobiDBLite consensus disorder prediction 689 740 - -
Lele46g0479 796 CDD LysM 107 151 IPR018392 -
Lele46g0479 796 MobiDBLite consensus disorder prediction 437 459 - -
Lele46g0479 796 CDD LysM 171 213 IPR018392 -
Lele46g0479 796 ProSiteProfiles LysM domain profile. 105 151 IPR018392 -
Lele46g0479 796 Pfam Transcription factor regulating root and shoot growth via Pin3 562 616 IPR013591 -
Lele46g0479 796 Pfam Transcription factor regulating root and shoot growth via Pin3 741 795 IPR013591 -
Lele46g0479 796 MobiDBLite consensus disorder prediction 442 459 - -
Lele46g0479 796 PANTHER PROTEIN BREVIS RADIX-LIKE 1 425 796 IPR044532 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0479 Lele-ChrLele46 3265017 3277497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0479 424 796 Major Intrinsic Protein MIP AT1G31880 40.409 5.35e-78 254