Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0477 ATGACAGGCTCATCGTCACCCAGAAAAGCTCCGAAGCCCCGACGAGAAAGAGCAAAAAAAACGACGAACTTTGTGAGAAAAGTTCGAGTGATATACACAGACCCAGATGCTACAGATTATTCAAGCGAAGAAGAAGCTGGTGGCTGCTCCTCCAAGAGATTTGTGAAGGAAATTCTCGTTCCGACCAAATCATGCGACGGAGGAGGAATAAACCTCAAAGAAGCGGGTCCCAGCAGTTTTGTCGCCAGCGCCAGCACCAGCGCTGCCGGCGGGAGCAGTCGTCGGAAACCATCAGGGTTGCCGAGAGGGGTACGACGTCGTAAATGGGGGACGTACGTGGCGGAGATCCGAGACCCGTTTTACAAGGTCCGAAGGTGGCTGGGGACATTCTATACTGTGGAAGAAGCTGCTTTGGCTTACGAGACGAGGAAGAAGGAATATGAAAGCTCGTCGAGGTCCCGTTCATCTCCATCATCTGTGCTCGAAGCCACTTCTAATAATAATAATAATAACAACAACAGTAAAACTAATTCAATGGCTAGTGACAGTGACGGTTCTACGAAAGAGATGAAGAATGTGAAAGAAGAACAGTTTTCTGGGGAAGAAGATGAAGAAGAAGGTTACATGCAGTACTTATTGGAGGAGCCAATCATGCCATCATTGGATGATGATACAGGAATGGTGTTTGCTGGTGGTGAATCTGATAATAATAATCTGGTGATTAATAATAATAATGATGTTAATAATGATGCTGATAATGGAGATTTGATCTTCGAGGAGAATAAGGAAGAAGGAGAAGGTGAAGAAGGAAGAATCATCAGCACTGTTCCATTGTCTGTTGAAAGTGATGATTCAAGTGATGGTGCAGAGTTAGCTTGGATTGATGAAGCTCTCGTTAATGATGAAGATGAAGATGAGGAATGGCTTTAG 930 0.4495 MTGSSSPRKAPKPRRERAKKTTNFVRKVRVIYTDPDATDYSSEEEAGGCSSKRFVKEILVPTKSCDGGGINLKEAGPSSFVASASTSAAGGSSRRKPSGLPRGVRRRKWGTYVAEIRDPFYKVRRWLGTFYTVEEAALAYETRKKEYESSSRSRSSPSSVLEATSNNNNNNNNSKTNSMASDSDGSTKEMKNVKEEQFSGEEDEEEGYMQYLLEEPIMPSLDDDTGMVFAGGESDNNNLVINNNNDVNNDADNGDLIFEENKEEGEGEEGRIISTVPLSVESDDSSDGAELAWIDEALVNDEDEDEEWL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0477 309 SUPERFAMILY DNA-binding domain 101 147 IPR016177 GO:0003677
Lele46g0477 309 MobiDBLite consensus disorder prediction 66 108 - -
Lele46g0477 309 MobiDBLite consensus disorder prediction 78 93 - -
Lele46g0477 309 SMART rav1_2 102 149 IPR001471 GO:0003700|GO:0006355
Lele46g0477 309 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Lele46g0477 309 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Lele46g0477 309 MobiDBLite consensus disorder prediction 1 24 - -
Lele46g0477 309 Pfam AP2 domain 102 149 IPR001471 GO:0003700|GO:0006355
Lele46g0477 309 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Lele46g0477 309 MobiDBLite consensus disorder prediction 152 186 - -
Lele46g0477 309 CDD AP2 102 140 IPR001471 GO:0003700|GO:0006355
Lele46g0477 309 MobiDBLite consensus disorder prediction 143 207 - -
Lele46g0477 309 Gene3D AP2/ERF domain 102 154 IPR036955 GO:0003700|GO:0006355
Lele46g0477 309 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 203 - -
Lele46g0477 309 MobiDBLite consensus disorder prediction 261 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0477 Lele-ChrLele46 3252140 3253069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0477 22 149 AP2-EREBP Transcription Factor Family AT1G68550 40.602 5.36e-21 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lele46g0477 AP2 1.9e-06 CL0081