LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele46g0458	ATGAAACAATCTCAATCACTGCTAGCTAAGCAATATCTTCTGTTTTCTTCTTGTACACAGCAAATAATCATAGTGGGAGTTTTCACTTTCTCCGAGGAGAACATCTCCGCTGTTGCTCCTGCCACTCTCTACAAAGCTCTCGTCCTTGATTGCGACAACCTCATCCCCAAGGTTGTCGATGCCGTCCAGAGCGTTGACATCCTCGAAGGCACCGGTGGCGCAGGAACCATCAAGAAGATCAACTTCCTCGAAGGTCGGTGTGCAGCTTGCAAGAATCAAAGAAGAAAGTGTCCTTCAGATTGCATTTTCTCTCCCTATTTTCCTCCCAATGATCCTGAAAGATTCGCTTGTGTTCATAGAACATATGGTAGCAGCAACGTTGGAAAAATGCTTCAGCAAATTCCAGTGCAAATGAGAGCACAAGCAGTGGATACCTTATATTTTGAAACAAGATGCAGAATGGAAGATCCTGTATATGGTTGCGTTAAGCTTATTTCTCAGTTGCATCAGAACTTGCATGATACAGAAAGTGAACTAGCAAGAGTTCAAGCTCTTGTTGCATTCCACAAGCTCCAAATCTCACAAGTTGAACTTCATCAACCTAACTTGGATGCATCACAAAGCAATATGGAGCAGTTTCAGTTCAATTATTCTACTCAGAATCCAACTTGGTTTATTAATTAA	684	0.4211	MKQSQSLLAKQYLLFSSCTQQIIIVGVFTFSEENISAVAPATLYKALVLDCDNLIPKVVDAVQSVDILEGTGGAGTIKKINFLEGRCAACKNQRRKCPSDCIFSPYFPPNDPERFACVHRTYGSSNVGKMLQQIPVQMRAQAVDTLYFETRCRMEDPVYGCVKLISQLHQNLHDTESELARVQALVAFHKLQISQVELHQPNLDASQSNMEQFQFNYSTQNPTWFIN	227

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele46g0458	227	Coils	Coil	165	185	-	-
	Lele46g0458	227	Pfam	Lateral organ boundaries (LOB) domain	86	183	IPR004883	-
	Lele46g0458	227	Gene3D	-	26	97	IPR023393	-
	Lele46g0458	227	PRINTS	Major pollen allergen Bet V1 signature	73	82	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Lele46g0458	227	PRINTS	Major pollen allergen Bet V1 signature	27	47	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Lele46g0458	227	PRINTS	Major pollen allergen Bet V1 signature	50	60	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Lele46g0458	227	ProSiteProfiles	LOB domain profile.	85	186	IPR004883	-
	Lele46g0458	227	SUPERFAMILY	Bet v1-like	26	85	-	-
	Lele46g0458	227	Pfam	Pathogenesis-related protein Bet v 1 family	27	85	IPR000916	GO:0006952
	Lele46g0458	227	PANTHER	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	86	211	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele46g0458	Lele-ChrLele46	3130848	3132319	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele46g0458	86	197	AS2 family	AT3G26660	58.929	7.53e-49	154

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	LOB	Lele46g0458		LOB	1.3e-34	No_clan