Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0450 ATGAGTGCATCAGAACACCCTAGCCCACGTAAGTGCGAGACGAGAAAATCAAAATCTTCATCTTCTTCTTCAGCAAATCTGAAGCTATTCGGTTTCCCGTTGAGCACAAGTTCTCGCGATACTTTCATTTCCTCAAACAATAAGAGATTATTCAAATGCCATTTCTGTCAGCGAGAATTCTCTAATTCTCAAGCTCTTGGAGGCCACCAAAATGCCCATAAAAGAGAACGCCGTGAAGCTACTTTTGCTCATTTCGACAACCTTAGCCATCTTCCTCTTCTTCCCCATCCTCATCGTCAATGCCTCCAGATCACTTCATCATCATCGTCACTTGCTTCATCAGGACCATCGACCCAGCTTGCTCATCACCATCAACCTTTTTTGTCCGAGCCTGAACTTTGGTATGGAGTTCGATCGTACGACAACGACAGAGAGGCCCGTGATGATGCTGAAAAAGAGCTCTCGAGTGAAGAATCAGTACGAAATGGTGATGATGTTCTCGATCTTAACTTGAGTTTATAG 522 0.4425 MSASEHPSPRKCETRKSKSSSSSSANLKLFGFPLSTSSRDTFISSNNKRLFKCHFCQREFSNSQALGGHQNAHKRERREATFAHFDNLSHLPLLPHPHRQCLQITSSSSSLASSGPSTQLAHHHQPFLSEPELWYGVRSYDNDREARDDAEKELSSEESVRNGDDVLDLNLSL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0450 173 Gene3D Classic Zinc Finger 33 89 - -
Lele46g0450 173 MobiDBLite consensus disorder prediction 145 164 - -
Lele46g0450 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
Lele46g0450 173 MobiDBLite consensus disorder prediction 145 166 - -
Lele46g0450 173 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Lele46g0450 173 PANTHER ZINC FINGER PROTEIN 5 15 173 IPR044299 GO:0010090
Lele46g0450 173 SUPERFAMILY beta-beta-alpha zinc fingers 47 78 IPR036236 -
Lele46g0450 173 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0450 Lele-ChrLele46 3074782 3075303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0450 42 98 C2H2 Transcription Factor Family AT5G27880 49.206 1.31e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele46g0450 None None None