Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0449 ATGTACAAAAGAGTACAAGACCTTGAGTGTGGAGGCTACGTTGGATCGCTTTCTTCTTCACCTTCAGCTTCCTTGTGCGTCTGTTTTGGATCACCACGGGCCTCATTCAATAGGAAATTCCTATTCCTTCTTGCACATTTTCTTATTCTGTGTTCTGTTCAGATCTTCGAAATAATGGTCGATCTGAGTGGAAAGGGATCGGAGGCAGAGGACGCCAATAACAGAAACCCTAACGGTGATTCATCGGACGAAAGCCCAATGAGCAACGAGCAGAAGAAAACCTGCGCCGACTGTGGCACATCAAAAACCCCTCTCTGGAGAGGCGGTCCCGCCGGGCCCAAGTCTCTGTGCAACGCATGTGGGATCAGAAGCAGGAAGAAGAAGAGAGCTATTCTAGGCATGAACAAGGGAAGTAATGAAGAGAAAAAGGGAAAAAGAAGCACCAACAATGCTAAGATTGGGGAAAGTTTGAAGAAGAGATTAATGGCTCTGGGAAGGGAGGTTTTGATGCAGAGATCAACGGTGGAGAGGCAGAGGAAGAAGCTGGGAGAGGAAGAACAAGCCGCCGTGTTATTGATGGCTCTCTCATATGGCTCTGTTTATGCTTAA 609 0.4745 MYKRVQDLECGGYVGSLSSSPSASLCVCFGSPRASFNRKFLFLLAHFLILCSVQIFEIMVDLSGKGSEAEDANNRNPNGDSSDESPMSNEQKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGMNKGSNEEKKGKRSTNNAKIGESLKKRLMALGREVLMQRSTVERQRKKLGEEEQAAVLLMALSYGSVYA 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0449 202 ProSitePatterns GATA-type zinc finger domain. 95 120 IPR000679 GO:0006355|GO:0043565
Lele46g0449 202 PANTHER OS01G0976800 PROTEIN 63 202 - -
Lele46g0449 202 MobiDBLite consensus disorder prediction 67 95 - -
Lele46g0449 202 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 87 129 - -
Lele46g0449 202 Pfam GATA zinc finger 95 129 IPR000679 GO:0006355|GO:0043565
Lele46g0449 202 SMART GATA_3 89 139 IPR000679 GO:0006355|GO:0043565
Lele46g0449 202 MobiDBLite consensus disorder prediction 69 95 - -
Lele46g0449 202 Gene3D - 89 155 IPR013088 GO:0006355|GO:0008270
Lele46g0449 202 CDD ZnF_GATA 94 129 IPR000679 GO:0006355|GO:0043565
Lele46g0449 202 ProSiteProfiles GATA-type zinc finger domain profile. 89 125 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0449 Lele-ChrLele46 3052368 3054136 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0449 87 202 C2C2-Gata Transcription Factor Family AT3G06740 71.186 4.23e-50 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele46g0449 GATA 2.5e-16 CL0167