Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0448 ATGCGCATTTCCTTGATCAGGGTTCTGTTCAGATCCTTCGAAATAATGATCGATCTGAGTGGAAAAGACGCCAATAACAGAAACCCTAACGACGATTCATCTGACGAAAGCCCAATGAGCAACGAGCAGAAGAAAACCTGCGCCGACTGTGGCACATCAAAAACCCCTCTCTGGAGAGGCGGTCCCTCCGGGCCCAAGTCTCTGTGCAACGCATGTGGGATCAGAAGCAGGAAGAAGAAGAGAGCTATTCTAGGCATGAACAAGGGAAGTACGGAAGAGAAAAAGGGCAGAAGAAGCACCAACAATGCTAAGATCGGGGAAAGTTTGAAGCAGAGATTAATGGTTCTGGGAAGAGAGGTTATGATGCAGAGATCAACGGTGGAGAGGCAGAGGAAGAAGCTGAGACAGGAAGAACAAGCCGCCGTTTTGTTGATGGCTCTCTCCTATGGCTCTGTTTATGCTTAA 465 0.4839 MRISLIRVLFRSFEIMIDLSGKDANNRNPNDDSSDESPMSNEQKKTCADCGTSKTPLWRGGPSGPKSLCNACGIRSRKKKRAILGMNKGSTEEKKGRRSTNNAKIGESLKQRLMVLGREVMMQRSTVERQRKKLRQEEQAAVLLMALSYGSVYA 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0448 154 MobiDBLite consensus disorder prediction 21 65 - -
Lele46g0448 154 Gene3D - 41 106 IPR013088 GO:0006355|GO:0008270
Lele46g0448 154 MobiDBLite consensus disorder prediction 23 50 - -
Lele46g0448 154 CDD ZnF_GATA 46 104 IPR000679 GO:0006355|GO:0043565
Lele46g0448 154 Pfam GATA zinc finger 47 81 IPR000679 GO:0006355|GO:0043565
Lele46g0448 154 MobiDBLite consensus disorder prediction 85 101 - -
Lele46g0448 154 MobiDBLite consensus disorder prediction 80 104 - -
Lele46g0448 154 PANTHER OS01G0976800 PROTEIN 25 154 - -
Lele46g0448 154 ProSitePatterns GATA-type zinc finger domain. 47 72 IPR000679 GO:0006355|GO:0043565
Lele46g0448 154 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 39 81 - -
Lele46g0448 154 SMART GATA_3 41 91 IPR000679 GO:0006355|GO:0043565
Lele46g0448 154 ProSiteProfiles GATA-type zinc finger domain profile. 41 77 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0448 Lele-ChrLele46 3047312 3047996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0448 39 154 C2C2-Gata Transcription Factor Family AT3G06740 69.492 2.58e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele46g0448 GATA 9.8e-17 CL0167