Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0445 ATGTCAACGGTTAGCTCTAGTGCGGTTTCCAAGGCCGGTGACATCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTACTGGTGGTGGATGATGATCCCACGTGCCTCATGATACTTGAAAAGATGCTTCGCACTTGCCTCTACGAAGTTACGAAATGCAATCGAGCAGAGATTGCGCTGTCACTTCTGAGAGAGAACAAAAATGGGTTCGACGTTGTTATAAGCGATGTACATATGCCAGACATGGATGGCTTCAAACTCTTAGAGCACATTGGGTTAGAGATGGACCTTCCTGTTATTATGATGTCTGCAGATGATGGAAAGAATGTTGTTATGAAAGGTGTGACTCATGGTGCCTGTGATTACCTTATAAAACCTGTGCGTCTCGAGGCTCTAAAGAATATATGGCAACATGTGATTCGTAAGAGAAAGAATGAATGGAAGGATTTGGAGCAGTCGGGTAGCGCCGAAGAAGGAGATCAGAAGCAAAAGCCTACTGATGAGGCGGAATACTCATCGTCTGCAAACGAAGGCAATTGGAGAAACGCAAAGAAGAGGAGGGATGAGGATGAAGAAGCAGAGGAGAGGGATGACTCATCCACGTTAAAGAAGCCACGAGTGGTTTGGTCAGTTGAGCTCCATCAACAGTTTGTGGCTGCTGTGAATCAGCTAGGAATTGATAAGGCAGTTCCTAAAAAAATTCTGGAATTGATGAATGTCCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAAATATCGTTTGTATCTTCGAAGGCTGAGTGGTGTTTCTCAACATCAGGGTAACCTGAATAGCTCTTTCATCAGCTCACAAGAGGCAACTTTTGGGGCAATTTCTTCACTCAATGGAACGGATCTTCAAACTCTTGCTGCTGCAGGTCAGCTTCCACCACAGAGTCTAGCAACACTTCAAGCGGTAGGACTAGGTAGATCAACTGCAAAAACTGGTATGCCCATGCCCCTTGTTGATCAAAGGAACTTTTTCAGTTTTGAAAACCCAAGATTAAGATTTGGAGAAGGACAACAGCAATATGGGAGCAGTGGCAAACCAATGAACTTACTTCATGGCATCCCTACCAACATGGAGCCAAAGCAGCTTGCTTCTTTGCACCAATCTACTCAGTCCCTAGGGGGCTTGAATATGCGAGTCAATGCTTCTCCTTCCCAGAGCAACCCCCTATTAATGCAGATGTCTCAATCACAACCAAGAGGTCATATGCTTGGTGAACATAATGTGTCTCATGTTCCCAGGCTCCCAACATCTATGGGGCAGCCTTCGGTATCAAATGGGTCTCCCAGTAGTGTTCTGGGAAGAAATGGTATTCCTGATAATAGCAGAGGAGTTTCATATAATCAAGTTTCACAATCCTCTTCAATGTTGAACTTTCCCATGAACCAAACCACAGAAATGCCTGCAAGTAGTTTTCCTCTCGGAAGCACTCCAGATATGTCAAGTATTGCGTCAAAAGGAGTTTACCAAGATGGAGTCGGTTCAGGAATGAAAGGATCTTCTGGATTTGGTCCAAGTTATGATATCTTTAATGAACTGCACCAGCATAAGTCCCATGAATGGGGGGTGCAAAACATGGGCCAGAGCCAGACATATGATGCCCCTCAACATGCAAATCCCTTACAAGGCAACATTGATGTCTCACCATCAGTTCTAGGCCATCAAGGTTTCTCTTCCAACCAACAGATTGGACATAATAGAGATGCTACTTCAGTTGGAAAAGCCATGTTCTCCCTAGGGGAAAGCATGGTGTCAGGTAATTTCCACAATACTGCTCAACATCAGGGTTTCCAAAACACGCTTCCTGCTGACAATTCTGTAAGGGTTAAGTCTGAAAGAATTCCTGATGCTAACTCTCTGACTAACCTTTTCCCTGAGCACTATGGCCAGGAGGATCTCATGAGTGCACTGCTTCTGAAACAGCAAGAAGGCATTGGACCAGCCGACAATGAATTTGACTTTGATGGATATTCCTTGGACAACATCCCTGTCTAG 2031 0.453 MSTVSSSAVSKAGDIVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAEIALSLLRENKNGFDVVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRLEALKNIWQHVIRKRKNEWKDLEQSGSAEEGDQKQKPTDEAEYSSSANEGNWRNAKKRRDEDEEAEERDDSSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQGNLNSSFISSQEATFGAISSLNGTDLQTLAAAGQLPPQSLATLQAVGLGRSTAKTGMPMPLVDQRNFFSFENPRLRFGEGQQQYGSSGKPMNLLHGIPTNMEPKQLASLHQSTQSLGGLNMRVNASPSQSNPLLMQMSQSQPRGHMLGEHNVSHVPRLPTSMGQPSVSNGSPSSVLGRNGIPDNSRGVSYNQVSQSSSMLNFPMNQTTEMPASSFPLGSTPDMSSIASKGVYQDGVGSGMKGSSGFGPSYDIFNELHQHKSHEWGVQNMGQSQTYDAPQHANPLQGNIDVSPSVLGHQGFSSNQQIGHNRDATSVGKAMFSLGESMVSGNFHNTAQHQGFQNTLPADNSVRVKSERIPDANSLTNLFPEHYGQEDLMSALLLKQQEGIGPADNEFDFDGYSLDNIPV 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0445 676 MobiDBLite consensus disorder prediction 147 167 - -
Lele46g0445 676 CDD REC_typeB_ARR-like 26 140 - -
Lele46g0445 676 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Lele46g0445 676 Gene3D - 201 263 - -
Lele46g0445 676 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Lele46g0445 676 MobiDBLite consensus disorder prediction 180 201 - -
Lele46g0445 676 FunFam Two-component response regulator 24 161 - -
Lele46g0445 676 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 393 IPR045279 GO:0009736
Lele46g0445 676 MobiDBLite consensus disorder prediction 430 463 - -
Lele46g0445 676 SUPERFAMILY CheY-like 23 147 IPR011006 -
Lele46g0445 676 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Lele46g0445 676 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Lele46g0445 676 FunFam Two-component response regulator 200 263 - -
Lele46g0445 676 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Lele46g0445 676 Gene3D - 24 162 - -
Lele46g0445 676 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 260 IPR017930 -
Lele46g0445 676 MobiDBLite consensus disorder prediction 147 201 - -
Lele46g0445 676 PIRSF RR_ARR_type-B 5 667 IPR017053 GO:0003677|GO:0003700|GO:0009736
Lele46g0445 676 SMART REC_2 24 136 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0445 Lele-ChrLele46 3021370 3024592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0445 58 676 Response Regulator Gene Family AT3G16857 49.323 4.32e-180 524
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lele46g0445 Response_reg 7.9e-23 CL0304