Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0444 ATGGGAGTGAAGGGTCTCTGGGAACTTCTTGCCCCCGTTGGTCGTCGGGTCTCCGTCGAGACCCTTGCCGGGAAGAAGCTTGCCATTGATGCGAGCATATGGATGGTTCAGTTTATGAAGGCGATGCGGGATGAGAAGGGAGAAATGGTTCACAATGCTCATTTGCTCGGCTTCTTTCGTCGAATTTGTAAGCTCTTGTTCCTCCGGACTAAGCCTGTTTTTGTCTTCGATGGCGGCACGCCTGTTCTTAAGCGACGAACTGTGATTGCGCGTCGGAGGCAGCGGGAATATGCTCAGGCCAAAGTTCGAAAGACTGCCGAGAAATTGCTTCTAAATCATTTAAAGGCTTTGAAGTTGAAAAAACTGTCAGATGATGTTAAAAACCAGAGGCTGAAGCAGAACAGTGACGCTAAGGGTAAGAAAAAATCAGATCAGGTGGACTTAATTGGTGGTGAGTTAGGAAGAAACAATGGAAAAGGGAAAGATAAAATATGTGGAGCTGAGGTGGACAAGAATATATCCAAGGCTACAGTAACAACAAGTTGCAATCAGGAGGAACTTGATGCAATGTTGGCGGCGTCTATTGTTGCAGAGGAAGATGGATTATTAGCTGGCAAAGCACCATCGGGTGTAGTTAGTCTCTCTGAGGAGGAAGGTGATACAGATCAAGAAATAATATTGCCAGAGTTAGGTGCTGAAGTTGATCTATCTGTGTTGGCTGCTTTACCGCAGTCAATTCAACTTGATATTGTCTCTCAGCTTAAAGGGAAAAAAGTAGAAGGACTACTGAAGGATTCTAACAACCAGAACCAATTTGAGGTCAATGAAAGCAGGGGCAAGGGTAAGGGAATTCTATTGCATGAAGTCGACACAGTAGGTTGTAGCTCAGGCAGTGATGATATGGTGGCAAAGAAATACAATCAGGACAAAGTGGATGAAATGTTGACTGCATCTATTTTGGCTGAGGAAAATGAGAAGTTAGTAAACAATGCATCAACATCTGGTGGGGCTTTCATCTCTGAGGAAGAGGATTACGTTAATGATGAAGATGAAGAAATGATCCTGCCAGCAATGCATGGTAAGGTTGATCCAGCTGTCCTAGCCTCTTTGCCTCCATCAATGCAACTTGACCTTCTTGGTCAGATGAGAGAGCGACTAATCTCAGAGAACAGACAGAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAATTGCAAATACAGGCTTACCTTAAAACTGTTGCTTTTCGTCGGGAGATAAATGAAGTGCAGAAAGCTGCTGCAGGGGGAGTGGTAGGTGGTGTCCAGACTTCTCGTATTGCATCTGAAGCCAACAGAGAGTATATATTTTCAAGATCTTTTACCGGTGATAAACAAGAACTTACTTCTACCAGCTTAGAGAAAAATAAAGACACACATCAGAAGACTCTAGGAAACCATTTTTCTCAGGGTTTTGTGAATAACAGTGATCCTGCCAATGATTCTAGTACCTCAAGTGGATTAGTTTGCAATGAAGCTGTAAGTCCATCTGATGAGAATATCCAAACATATCTGGATGAGAGGGGCCAATTTCGTGTTAGTAGACTTAGAGCTATGGGGATGCGTATGACCCGTGACATACAAAGAAATTTGGATCTGATGAAGGAGATTGAGCTGGAAAGGACAGTTGCAAATAAGGCAGAAAATTATGCAATTCATCGTGGGGAGGAAAATGTTGCATCAAAAGGTTCTAGCAACCTGCTTGTTGGTATGTCCAGCGGGTCAAATGTTGACTTAGTTGGAGATAATTCTAGAAATGAACAACCTGCATTAGCAGGGGATGCTTCTTTAGAGATATCCTTCATGGATGATGGTGATAACAAGTGCCTTAATGATGATCATGATTTATTTGCTAGTTTGGTAAAAGGTAATTCAGTAGTATTTTCTTGTGCTGACAATAACTCGTTGAAAGAACAAGTTTCTGATTCTAGTTCTGATTGTGACTCTGAAGAAGGAATTGTTGAAGGTAAAAGTGATGTTAATATGGAAATGCAACCATCTGTTGCAAAAGATAATTGTAATGATGAGTCTGATGTGGAATGGGAGGACGGAGTTTGTGATGATGCTAACACAACATTGTGCACAGTTGAGGCACAGAAAAAAACATCTCGAGGTTGCTTGGAGGAGGAGGCTGATTTACAGGAGGCAATACGGAGAAGTCTGGAGGTCATGGGGGAACGCAAACTTAATTCCACGTCATCCAAGCATGAGAATTCAAATGCTGAGGGGGACAAATCAGGTTATGCATTAAAGCAAGATGATAATTTGGTTGATTCTGGAGTGAAGGGTATTTGTGGCAGTTCTGGAGTACTAAATAGAGACATTGGAATGGGTGAGTCCACTTTGCAAAGGGAAGGTAACACTGAACACAGTGAATCATATGATAAAATTATAGACGATAAGATGGATAGCACAGCGAGAAGCATCAAACAAGTTTCCCAGTCTCCTGAGGGACAGTCAAAGTCATCTGTGGCATTTGACTCCAAGAAGACAGTATCACTTATCAAGAAGCCTCATTCAATAGAGGTAGGACCACATTCTGAAGATTTGTTGTACTCTGCAAATGAAAGTACTAGGAATGAGATTCACATGGCTGCAGAGCAACTCTTGGGTACCTTAAATGAAGATGGCAAGGAGTCTACCAATGGTAACAAATCTCCTGTAGTTGACTCCCTTGGTGCTTCAGAAGAGGAGAAAAAGAACTGCAGTTATGAAGCTGAACCTTTTGGTAATTATTCTGAGGTGCCTGAGCCTGTTGCACCTTTTGTGAATTCCTCCTTGGAAGGTTTAACAGAAGACCTTGACACTCAGCCAGAGTTGCCTAGAGAGGAAAATTGTGGAAGCTTTGAGAAAAGGAAGAGTAACCTTGGTAAAGACGCAATGGAGCCCCCAGGTTTCTTGTCTGCTGAAGACCTTGAAACTCAGTCAGAGTTGCCTAGAGAGGATAACCATGGAAGCTTTGAGGAAAGCAAGAATAATCTTGTCAAAGATGCAATGAAAGCCCCAGGTCATTTGTCTGCAGATGCAATCGAGTGTGGTTTGGAGGAAGAAATCCGAATTCTTGGTCAAGAATATACCAACCTAGAATATGAGCAGAGGAAGCTTGAACGCAATGCAGAATCTGTCAACAGTGAATTATTCACTGAATGTCAGGAACTATTGCAAATGTTTGGCTTGCCATATATTATCGCTCCAATGGAAGCAGAAGCACAATGTGCTTATTTGGAACTTGCAAAACTGGTGGATGGTGTTGTGACTGATGACTCTGATGTCTTTTTATTTGGGGCACGTAGTGTCTACAAGAATATATTTGATGATCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAGAAGGAGCTTGGATTGACCAGAGAAAAATTAATCCGCATGGCTTTGCTTCTGGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGAATTGTAAATGCTATTGAGGTTGTAAATGCATTCCCTGAGGAAGATGGCCTTCTGAAATTCCGGCAGTGGGTTGAGTCACCTGATCCTACCATCTTTGGAAAGTTTGAAACAAAAAGCGGATCCAGTTCCCGAAAGAAAGGGTCAAAAGTTGAAGAAAACGTTAGTGGCACAAATTGCTATATAGAAGAGACTATGGTGGATCAAAACGTTTCCCATGCTCAGGAACATGACTCATCAGATGAAATACAAGAAATCAAGCAGATTTTCATGAATAAACATGTAATCATATTTTCTGCTCTATCTGTTTTCATTAATATATGGATGAGAAATGTGAGCAAGAATTGGCACATTCCTTCTTCTTTTCCAAGTGAAACAGTTATATCTGCCTACTCTTGTCCACAAGTGGACAAGTCTACTGATCCATTTGCCTGGGGAAAGCCGGATCATCTTGTTCTTCGCAAATTGTGCTGGGAGAAGTTTGGCTGGACTAGTCAGAAAGCAGATGAGTTGCTTTTACCTGTTTTAAAGGAATATAACAAAAATGAGACTCAACTGCGGTTGGAAGCATTTTATACTTTCAATGAAAGATTCGCAAAAATTCGCAGTAAGAGAATTAAGAAAGCAGTGAAAGGAATCACTGGCAATCCCTCTTCAGAGTTTACAGAAGAATCTGCAGAGGACTTGTCTAAGAGTGGGAAGAATGAGACAGGAATTCCTGCTGAACTTGGGATTAGCAAATCAGAGACTTTTAAGGGAACAGGAGAAAGCCCTGCTGAAATGAAGCCCCTAAAGTCAAAACAGTCAAGGAAAAGGAAGAATTCTGGAGATACTGTTGCTAAGACTAAGACACAGTCAAGGAAAAAGGGTAAATTGAATGCTCCTGCATCAGCTTCTGGTTTGCCTGAGGTAGATGTGCAGCCAGGAGAAGAGCCTACTCAGCCAAGTGATGGTAATGGTTTGAGTAATAGAAGTAGCAAAGGCAGAGCAAAAGGTGCAAGAGTTCCAACAGGAAGGAGGAAGAAAAGTCTTGGTATTGATTCACGTAAAACTACATCTAGTGATAGTGACAGTGATGACCATGAGCCGGAAGTGCATGGTAAAAACTCAAGAGGGACAGAACAGGTCCGAAGGTCTATGCGTTCTCGCAAGATTGTCAACTATTCCATGGACAACATTGAAATTGAAGATACTGTTGCCTCATCTGATCAGAGCAATAAGACAGACTTGAATGGAGAGCAGGTAGATGAAATATTTTCTCGGCTGCATGGTGTTTGTGGCGATGCAGACTCTGGTTTCAGCAGACATAAGGAAAGCACAATAAGCCTTTCTTCAAAGAAGGATTTATCTAGAAGCTATCTGGAATCTGGAGGGGGTTTATGTACTGATGAAAAAACTAGTCCCGCAGGAGCGAGCAATTGTGATAACCCTTGTGATGGCGACTACCTTCAAGCGGGAGGTGGATTTTGCCCAGATGAGGACGAGACAGGTAGCAAACATGATGAAATTCATGACAACGACTACCTTAGAGCGGGAGGTGGATTTTGCCTTGATGAGGATGAGACAGGTAGCAAACAAAATGAAGTTCATGATGTGGCAACTATGGTAGAGGATAGTGCAGAGCTTACTCGTGGTTCTTTTGGTTTTGGGAATGAGGCTGAATGTGATAAAAATGTTACTTATCAATCAAGTTCAGTCAATAAAACATCTGGAGTTGAACTGCAAGATAGAGGGAACACTAAACACGAGAGTGAGATGAATGCTCATGGCAATACTGAGAATGCGGCGGCATCATTTAGCGCGATGCCTTTTCTAAGAAAGAAAAGGAGGAAGGGCTGA 5325 0.4214 MGVKGLWELLAPVGRRVSVETLAGKKLAIDASIWMVQFMKAMRDEKGEMVHNAHLLGFFRRICKLLFLRTKPVFVFDGGTPVLKRRTVIARRRQREYAQAKVRKTAEKLLLNHLKALKLKKLSDDVKNQRLKQNSDAKGKKKSDQVDLIGGELGRNNGKGKDKICGAEVDKNISKATVTTSCNQEELDAMLAASIVAEEDGLLAGKAPSGVVSLSEEEGDTDQEIILPELGAEVDLSVLAALPQSIQLDIVSQLKGKKVEGLLKDSNNQNQFEVNESRGKGKGILLHEVDTVGCSSGSDDMVAKKYNQDKVDEMLTASILAEENEKLVNNASTSGGAFISEEEDYVNDEDEEMILPAMHGKVDPAVLASLPPSMQLDLLGQMRERLISENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREINEVQKAAAGGVVGGVQTSRIASEANREYIFSRSFTGDKQELTSTSLEKNKDTHQKTLGNHFSQGFVNNSDPANDSSTSSGLVCNEAVSPSDENIQTYLDERGQFRVSRLRAMGMRMTRDIQRNLDLMKEIELERTVANKAENYAIHRGEENVASKGSSNLLVGMSSGSNVDLVGDNSRNEQPALAGDASLEISFMDDGDNKCLNDDHDLFASLVKGNSVVFSCADNNSLKEQVSDSSSDCDSEEGIVEGKSDVNMEMQPSVAKDNCNDESDVEWEDGVCDDANTTLCTVEAQKKTSRGCLEEEADLQEAIRRSLEVMGERKLNSTSSKHENSNAEGDKSGYALKQDDNLVDSGVKGICGSSGVLNRDIGMGESTLQREGNTEHSESYDKIIDDKMDSTARSIKQVSQSPEGQSKSSVAFDSKKTVSLIKKPHSIEVGPHSEDLLYSANESTRNEIHMAAEQLLGTLNEDGKESTNGNKSPVVDSLGASEEEKKNCSYEAEPFGNYSEVPEPVAPFVNSSLEGLTEDLDTQPELPREENCGSFEKRKSNLGKDAMEPPGFLSAEDLETQSELPREDNHGSFEESKNNLVKDAMKAPGHLSADAIECGLEEEIRILGQEYTNLEYEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLELAKLVDGVVTDDSDVFLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLLKFRQWVESPDPTIFGKFETKSGSSSRKKGSKVEENVSGTNCYIEETMVDQNVSHAQEHDSSDEIQEIKQIFMNKHVIIFSALSVFINIWMRNVSKNWHIPSSFPSETVISAYSCPQVDKSTDPFAWGKPDHLVLRKLCWEKFGWTSQKADELLLPVLKEYNKNETQLRLEAFYTFNERFAKIRSKRIKKAVKGITGNPSSEFTEESAEDLSKSGKNETGIPAELGISKSETFKGTGESPAEMKPLKSKQSRKRKNSGDTVAKTKTQSRKKGKLNAPASASGLPEVDVQPGEEPTQPSDGNGLSNRSSKGRAKGARVPTGRRKKSLGIDSRKTTSSDSDSDDHEPEVHGKNSRGTEQVRRSMRSRKIVNYSMDNIEIEDTVASSDQSNKTDLNGEQVDEIFSRLHGVCGDADSGFSRHKESTISLSSKKDLSRSYLESGGGLCTDEKTSPAGASNCDNPCDGDYLQAGGGFCPDEDETGSKHDEIHDNDYLRAGGGFCLDEDETGSKQNEVHDVATMVEDSAELTRGSFGFGNEAECDKNVTYQSSSVNKTSGVELQDRGNTKHESEMNAHGNTENAAASFSAMPFLRKKRRKG 1774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0444 1774 MobiDBLite consensus disorder prediction 129 148 - -
Lele46g0444 1774 FunFam DNA repair protein UVH3 1 146 - -
Lele46g0444 1774 MobiDBLite consensus disorder prediction 889 916 - -
Lele46g0444 1774 CDD PIN_XPG_RAD2 1056 1140 - -
Lele46g0444 1774 Coils Coil 1033 1060 - -
Lele46g0444 1774 FunFam DNA repair protein UVH3 1139 1196 - -
Lele46g0444 1774 CDD H3TH_XPG 1142 1300 - -
Lele46g0444 1774 MobiDBLite consensus disorder prediction 820 840 - -
Lele46g0444 1774 MobiDBLite consensus disorder prediction 889 904 - -
Lele46g0444 1774 MobiDBLite consensus disorder prediction 1726 1774 - -
Lele46g0444 1774 MobiDBLite consensus disorder prediction 477 504 - -
Lele46g0444 1774 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1139 1362 IPR036279 -
Lele46g0444 1774 MobiDBLite consensus disorder prediction 739 765 - -
Lele46g0444 1774 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Lele46g0444 1774 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lele46g0444 1774 MobiDBLite consensus disorder prediction 1432 1446 - -
Lele46g0444 1774 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lele46g0444 1774 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lele46g0444 1774 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lele46g0444 1774 PRINTS Xeroderma pigmentosum group G protein signature 658 676 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Lele46g0444 1774 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 255 - -
Lele46g0444 1774 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 723 742 IPR003903 -
Lele46g0444 1774 Pfam Ubiquitin binding region 362 385 IPR025527 -
Lele46g0444 1774 Pfam Ubiquitin binding region 231 253 IPR025527 -
Lele46g0444 1774 SUPERFAMILY PIN domain-like 2 1154 IPR029060 -
Lele46g0444 1774 FunFam DNA repair protein UVH3 1019 1138 - -
Lele46g0444 1774 Gene3D - 1 142 - -
Lele46g0444 1774 SMART xpgn3 1 98 IPR006085 GO:0004518
Lele46g0444 1774 MobiDBLite consensus disorder prediction 478 504 - -
Lele46g0444 1774 Gene3D - 1003 1138 - -
Lele46g0444 1774 SMART HhH_4 1141 1174 IPR008918 GO:0003677|GO:0003824
Lele46g0444 1774 SMART xpgineu 1070 1139 IPR006086 GO:0004518
Lele46g0444 1774 MobiDBLite consensus disorder prediction 950 973 - -
Lele46g0444 1774 Pfam XPG I-region 1073 1154 IPR006086 GO:0004518
Lele46g0444 1774 MobiDBLite consensus disorder prediction 129 154 - -
Lele46g0444 1774 ProSitePatterns XPG protein signature 2. 1073 1087 IPR019974 GO:0016788
Lele46g0444 1774 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Lele46g0444 1774 MobiDBLite consensus disorder prediction 1502 1543 - -
Lele46g0444 1774 MobiDBLite consensus disorder prediction 1474 1488 - -
Lele46g0444 1774 MobiDBLite consensus disorder prediction 822 840 - -
Lele46g0444 1774 Gene3D - 1139 1254 - -
Lele46g0444 1774 CDD PIN_XPG_RAD2 2 92 - -
Lele46g0444 1774 Pfam XPG N-terminal domain 1 96 IPR006085 GO:0004518
Lele46g0444 1774 MobiDBLite consensus disorder prediction 947 981 - -
Lele46g0444 1774 MobiDBLite consensus disorder prediction 1374 1547 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0444 Lele-ChrLele46 2997132 3007412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0444 1064 1171 Core DNA Replication Machinery Family AT5G26680 36.036 2.50e-12 69.3