Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0409 ATGGTGTTGGGATGGAATCGAAGAAAGAACAAGAACAGAAAGCTCAATCTGGAGCTTGTTATTCCGCACCACTTCATGTGTCCTGTTTCTCTTGACTTGATGAAAGATCCCGTCACGTTATCATCTGGAATCACCTACGATCGTGCGAGCATCGAACGGTGGTTGGAAGATGGGAATTTCACGTGCCCTGTGACGAATAAGATTCCCTCCAGCTTCGATATCGTTCCTAATCACTCGCTTAGGGTTATGATTCAGGATTGGTGCGTTGAGAATCGAGGATTTGGGATCGAGAGAATTCCGACTCCCAGAGTACCTGTTTCTCCAACCCAAGTCGAAGAGATTCTTATTCATCTTAAAGCCTCTGCGTCGCGTTTGGATCGGTATGGTTTTCTTCAAGTTGTGCAGAGAATCAAGGAATGGAGTTCTGAGAGCGAGAGAAACAGAAGGTGCATTGTGGACAATGGCACTCCTAGTGTATTAGCATCTGCATTTCGTGAATTTGCGAATGACTCTATTGAGGAAAATGTGAGTTTGCTGGAGGAGATTTTGAATGCCCTAAATTGGATGCTTCCTCTTCAATTCGAAGCCCAGAAAATTTTGCAATCTTCAGATGCCTTGCGTTGCTTGGTTTGGTTCTTGAAGAATCAAGATCTTTCCGGAAAACAGAATGCCATTGTTGCTTTGAGAGAGATCCTTTCTTCTGGTGAGGAACAGACTTTTGAGACTATGGCAGAAATCGAAGGGACCATTGAGCTATTAGCGGAGTTCATTAACAAGAGAATTAGCCCAACAATCACGAAAGCTTCAATGGGGATTGTTTATTACTTGGCTTCATCTTCTTATCCATCAAGTGAGAAGGTGAAGATAAAATTTATTGGCCTTGGTTTGATCTCTTCACTTCTGGAGATCCTAATTGATGCAGACAAGAGCCTATCTGAGAAGGCTTTAGGTGTTTTTGATTCACTCTGTGACTGTCAAAAAGGTATAGAAAAGGCTTTCAGTAATGCTCTAACAGTTCCTGTATTGGTAAAGAAGATTTTGAGGGTTTCAGCTTTGGCAACAGATCACTGTGTGTCTGCTATTTGGAAGTTGTGCAGATATGGATCTAAAGATGAAGAAGTAGAAGAAACTCTGATTGAAGCACTTCAAGTTGGTGCGTTTCAGAAGCTGTTGGTGGTGTTGCAGGTTGGCTGTGGTGATGAGACGAAGGAGAAAACAACAGAGCTTCTGAAATTGTTCAATCCTTATCGGGCTGGCTTGGAATGCATAGACTCAGATTTCAAGAATGTCAAGAGATCATTTTGA 1305 0.4245 MVLGWNRRKNKNRKLNLELVIPHHFMCPVSLDLMKDPVTLSSGITYDRASIERWLEDGNFTCPVTNKIPSSFDIVPNHSLRVMIQDWCVENRGFGIERIPTPRVPVSPTQVEEILIHLKASASRLDRYGFLQVVQRIKEWSSESERNRRCIVDNGTPSVLASAFREFANDSIEENVSLLEEILNALNWMLPLQFEAQKILQSSDALRCLVWFLKNQDLSGKQNAIVALREILSSGEEQTFETMAEIEGTIELLAEFINKRISPTITKASMGIVYYLASSSYPSSEKVKIKFIGLGLISSLLEILIDADKSLSEKALGVFDSLCDCQKGIEKAFSNALTVPVLVKKILRVSALATDHCVSAIWKLCRYGSKDEEVEETLIEALQVGAFQKLLVVLQVGCGDETKEKTTELLKLFNPYRAGLECIDSDFKNVKRSF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0409 434 PANTHER WDSAM1 PROTEIN 18 414 IPR045185 GO:0061630
Lele46g0409 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 94 IPR013083 -
Lele46g0409 434 ProSiteProfiles U-box domain profile. 20 94 IPR003613 GO:0004842|GO:0016567
Lele46g0409 434 FunFam RING-type E3 ubiquitin transferase 21 92 - -
Lele46g0409 434 CDD RING-Ubox_PUB 25 67 IPR045210 -
Lele46g0409 434 SUPERFAMILY ARM repeat 134 394 IPR016024 -
Lele46g0409 434 SMART Ubox_2 24 87 IPR003613 GO:0004842|GO:0016567
Lele46g0409 434 SUPERFAMILY RING/U-box 21 95 - -
Lele46g0409 434 Pfam U-box domain 21 92 IPR003613 GO:0004842|GO:0016567
Lele46g0409 434 Gene3D - 115 411 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0409 Lele-ChrLele46 2763822 2765126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0409 18 434 U-box Gene Family AT5G37490 42.619 6.20e-106 319