Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0406 ATGAGAAGACGGGATGACGGCGAGGACGACGACGACGACGAAGAGTGCAACGCCGCGAGGAAGCAGCCACGCAAAAGATTCCGGTTTCATCCTCGTTTCGATTTCTGCTTCCCCGACCCCGATTCTAGTTGGCGAGCCGGAACCTCCGCACACGGCGGTGGCGCCACTAATCTCCGCCGCCGATTCCTGATTCGTCCAGAGAACGGATGGTACAGATTGTGGAAGTATTTCATTCTGTCTTGGGCAGTGTACTCTTCCTTCTTCACTCCTCTGGAGTTTGGATTCTTCAGAGGATTGCCGGAGGAAGTCTTCTTGCTCGACATCGCCGGCCAGTTTGCTTTCCTCATTGATATCGCCATCCGATTCTTCGTCGCCTATCGTGACATCCATTCCTATTGCATGGTCTACGATCACAATCAAATTGCCACGAGGTACCTGAAGTCTCGGTTCACAGTTGATATTCTTAGTTGTCTTCCTTGGGATTATATTTACAAGGCTACTGGGAGGAAAGAAGTCATCAGGTATTTTTTATGGATTAGGCTGAGTCGAGCATGTAGAGTGACCGAGTTTTTTGAGAGGCTGGAGAAAGATATTAGGTTCAATTACCTCTTTACAAGAATCGCGAAACTTCTTGTTGTAGAACTTTATTGCACCCACACAGCTGCCTGTATCTTCTACTATCTTGCTACCACTTTGCCTCCATCGAACGAAGGTTATACATGGATAGGGAGCTTAAAGATGGGAGATTATAGCTATTCAGACTTTAGACATATCAATCTTTGGAAGCGTTATGTGACATCACTCTACTTTGCAATTGTTACCATGGCAACTGTTGGCTATGGAGACATTCATGCAGTCAATGTCAGGGAAATGATATTTGTCATGGTTTATGTCTCCTTTGATATGATTCTCGGTGCTTACCTTCTTGGTAATATGACAGCATTGATTGTGAGAGGATCAAAAACAGAGAGGTTTAGGGACAAAATGACTGATATTGTTAAGTACATGAATAAAAACAATTTGGACAAGCAGATAACTAAAGCTATAAAAGGCCATTTACGCTTACAGTATGATCGCAGTTACACTGAGGCTGCTGTGCTTCAGGATATTCCAGCCTCTATTCGTGCAAAGATTTCAGTGAATTTGTATGATCAATTTATACAAAAAGTTCCTCTTTTCAAGGGATGCTCTTTGGGGTTCATTAAGCAAATTGCAATCAGAGTCCATGAAGAGTTTTTCCTTCCAGGAGAAGTGATTATGGAGCAAGGAAATGTAGCCAATCAACTTTACCTTGTATGCGATGGTGAGCTGGTTGAGATGAGGACAGAAGATGATGATAATGAAGTGTTCATAAAGCATTTGCAAAACTACTGTTTCTTTGGCGAGATTTCTTTTCTTTGTGATATACCTCAACCTTCAACTATACGAGCGTGTGAATTTTGCAAGGTTTTGCGACTTGATAAGCATTCCTTTATAGAAACACTGAAGGTATATTTTGCAGATGGTCGAGTTATCTTGAACAATCTCCTTGAGGGAAAAGACTCCAGTCTTCAGCAGAAGCTCCTACAATCAAGCTTCTCCTTGACTCTTGAAAACCATGAAACAGAGATGGCTATGAGAATGAATTGTGCTGCATATGAAGGAGACGTTCCCTTTTTGAAACGTTTGATTGAATCAGGAGCAGATCCCAATAAGACTGATTATGATGGTAGATCACCCTTGCTTATTTCAGCATCGAACGGATGTGTAGAAATTGTTCGCTTTCTTATTGGACATGGAGTGATGATCAATTTCTCTGATAAATTTGGGAATTCCCCCTTGTTTGAAGCCATCAAGAATGGGCATGAAGAAGTAGCTTCTTTACTTGTGGATGCGGGGGCTACCCTTACCGTAGATCATGCTGGGAATTTTCTCTGCATGACTGTTGCAAAGAAGGAGTTGAGCCTTCTAAGACGGGTCTTGGATTACGGTATTAATCCAAATGCCAGAAATTATGATCAGCGTACCCCTCTTCACATAGCCGCCGCTGAAGGTTCGTGTAAAATGGCTGAGTTGCTTCTAGAAGTAGGAGCAAGTGTTTTGTCAAAGGACAGATGGGGGAATACAGCGATTGATGAAGCTCATATGGGTGGAAATAGGAACATGATCAAAATGCTCGAAGTTGCAAAAATTTCTCAGTTGACTGAATTATCCCACAATATACAAGAACCTCGAGCAAAAGTGCTATTACCATCAACAGATAAAATTCCAAGAAAGAAATGCACTGTGTTTCCTTTCCATCCATGGGATCACAAAGCGGATAGAAGAGAGGGAGTTATCTTATGGGTTCCAAGAAGCATTGAAGAGCTTGTGCAGGTGGCAAGGAAGCATCTGAACTTAAGTGGTTCCTGTATTTTATCAGAACATGGCGGTAAAATTCTTGACGTAGACATGATTAGCAATGATGAGAAGCTATTTCTGGTGAGCGAACAAGAATCAGAGAGCTCATAA 2490 0.4237 MRRRDDGEDDDDDEECNAARKQPRKRFRFHPRFDFCFPDPDSSWRAGTSAHGGGATNLRRRFLIRPENGWYRLWKYFILSWAVYSSFFTPLEFGFFRGLPEEVFLLDIAGQFAFLIDIAIRFFVAYRDIHSYCMVYDHNQIATRYLKSRFTVDILSCLPWDYIYKATGRKEVIRYFLWIRLSRACRVTEFFERLEKDIRFNYLFTRIAKLLVVELYCTHTAACIFYYLATTLPPSNEGYTWIGSLKMGDYSYSDFRHINLWKRYVTSLYFAIVTMATVGYGDIHAVNVREMIFVMVYVSFDMILGAYLLGNMTALIVRGSKTERFRDKMTDIVKYMNKNNLDKQITKAIKGHLRLQYDRSYTEAAVLQDIPASIRAKISVNLYDQFIQKVPLFKGCSLGFIKQIAIRVHEEFFLPGEVIMEQGNVANQLYLVCDGELVEMRTEDDDNEVFIKHLQNYCFFGEISFLCDIPQPSTIRACEFCKVLRLDKHSFIETLKVYFADGRVILNNLLEGKDSSLQQKLLQSSFSLTLENHETEMAMRMNCAAYEGDVPFLKRLIESGADPNKTDYDGRSPLLISASNGCVEIVRFLIGHGVMINFSDKFGNSPLFEAIKNGHEEVASLLVDAGATLTVDHAGNFLCMTVAKKELSLLRRVLDYGINPNARNYDQRTPLHIAAAEGSCKMAELLLEVGASVLSKDRWGNTAIDEAHMGGNRNMIKMLEVAKISQLTELSHNIQEPRAKVLLPSTDKIPRKKCTVFPFHPWDHKADRREGVILWVPRSIEELVQVARKHLNLSGSCILSEHGGKILDVDMISNDEKLFLVSEQESESS 829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0406 829 ProSiteProfiles Ankyrin repeat profile. 666 698 IPR002110 GO:0005515
Lele46g0406 829 SMART cnmp_10 392 510 IPR000595 -
Lele46g0406 829 SUPERFAMILY Ankyrin repeat 539 719 IPR036770 -
Lele46g0406 829 MobiDBLite consensus disorder prediction 1 20 - -
Lele46g0406 829 Pfam Ankyrin repeats (many copies) 654 707 IPR002110 GO:0005515
Lele46g0406 829 ProSiteProfiles KHA domain profile. 753 829 IPR021789 -
Lele46g0406 829 Gene3D - 72 317 - -
Lele46g0406 829 Gene3D Jelly Rolls 380 501 IPR014710 -
Lele46g0406 829 Gene3D - 505 727 IPR036770 -
Lele46g0406 829 ProSiteProfiles cAMP/cGMP binding motif profile. 392 495 IPR000595 -
Lele46g0406 829 ProSiteProfiles Ankyrin repeat region circular profile. 602 631 - -
Lele46g0406 829 Pfam Ion transport protein 72 317 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele46g0406 829 ProSiteProfiles Ankyrin repeat region circular profile. 569 601 - -
Lele46g0406 829 Pfam KHA, dimerisation domain of potassium ion channel 752 820 IPR021789 -
Lele46g0406 829 SUPERFAMILY Voltage-gated potassium channels 68 317 - -
Lele46g0406 829 ProSiteProfiles Ankyrin repeat profile. 569 601 IPR002110 GO:0005515
Lele46g0406 829 Pfam Cyclic nucleotide-binding domain 412 496 IPR000595 -
Lele46g0406 829 CDD CAP_ED 392 506 IPR000595 -
Lele46g0406 829 FunFam Potassium channel SKOR 72 317 - -
Lele46g0406 829 Pfam Ankyrin repeats (3 copies) 543 630 IPR002110 GO:0005515
Lele46g0406 829 ProSiteProfiles Ankyrin repeat region circular profile. 666 698 - -
Lele46g0406 829 PANTHER POTASSIUM CHANNEL AKT1 53 824 IPR045319 GO:0005249|GO:0006813
Lele46g0406 829 SMART ANK_2a 633 662 IPR002110 GO:0005515
Lele46g0406 829 SMART ANK_2a 602 631 IPR002110 GO:0005515
Lele46g0406 829 SMART ANK_2a 666 695 IPR002110 GO:0005515
Lele46g0406 829 SMART ANK_2a 569 598 IPR002110 GO:0005515
Lele46g0406 829 SMART ANK_2a 536 565 IPR002110 GO:0005515
Lele46g0406 829 FunFam Potassium channel KAT2 380 516 - -
Lele46g0406 829 Gene3D Helix hairpin bin 320 379 - -
Lele46g0406 829 PRINTS EAG/ELK/ERG potassium channel family signature 308 317 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele46g0406 829 PRINTS EAG/ELK/ERG potassium channel family signature 475 483 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele46g0406 829 PRINTS EAG/ELK/ERG potassium channel family signature 216 226 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele46g0406 829 PRINTS EAG/ELK/ERG potassium channel family signature 107 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele46g0406 829 PRINTS EAG/ELK/ERG potassium channel family signature 264 281 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele46g0406 829 SUPERFAMILY cAMP-binding domain-like 320 509 IPR018490 -
Lele46g0406 829 ProSiteProfiles Ankyrin repeat profile. 602 634 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0406 Lele-ChrLele46 2743011 2755395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0406 1 698 Ion Channels AT5G37500 56.667 0.0 840