Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0401 ATGTTAGCGAATAACTCTCTCTCTTCGGCTCCTACCTCCGAGACCTTTCCTTGCGGTGGTGATAATGGCGGTATCACGGCGAATAAAAGAAAGAGAAGACCCGCGGGAACTCCAGATCCGGATGCGGAGGTGGTGTCGCTGTCGCCGAAGACGTTACTGGAATCGGACCGGTACGTATGCGAGATCTGTAATCAGGGGTTTCAGAGGGACCAGAACCTGCAGATGCACCGGCGGAGGCACAAGGTGCCGTGGAAGTTGCTAAAGAGGGAGACGCCGGCGGCGAGGAAGCGCGTGTTCGTGTGCCCGGAGCCGACGTGCTTGCACCACGACCCGTGCCACGCGCTGGGGGATCTCGTCGGAATAAAGAAACACTTCAGAAGAAAACACAGTAACCACAAACAATGGGTCTGTGAACGATGCTCAAAAGGCTACGCAGTTCAATCTGATTACAAAGCTCATCTCAGAACCTGTGGTACCAGAGGCCACTCTTGCGATTGTGGTCGCGTCTTCTCCAGGGTGGAGAGTTTTATTGAACACCAAGATGCTTGTAACATGGGGCGGCTCCGGTCGGAAACGCAGGAGGCGCTACATCAGCAGCAGCAGCAGCCACTGGCGCCGGCGTGCTTGTCGCGAACGGCTTCGAGCCCGAGTCAGTCGAGTGAAACCAATTTCAGCACCGGTCCGAACTGGAATAATGGTCTTGTTGTGTTGCCTAATAAGCCGACGACCACGACCACGACTGAAGCGGCGTTATTGTTGAACCCTACCATTACTACTTCCACTACTACAACAGTTGCTCATCATCATGAAACCTCATCCAACAATAAGAACAAGTATAAACTGTGTCCAAACTTGGATCTTCGTCTCTCTACTTCCTCTAGTTCCATTATTCCAATTGATACTTCAACAACACCTAATAAGAGAGATGAAATTACCCGATCATCAAACCACTTTCGGATTTCGATTTGCGACAACAATCGCAGGAATTCACCCAAGGAGAGCTGTAATAGTAGCGATAAACCACAAGGTAGTAATGGAGGGATGATGAGGATGGTTCATCATGAAGAGGAAGCACGTGAGCAGTTAAGGTTAGCCATGGCGGAGAAGGCATATGCAGAGGAAGCAAGGAAGCAAGCGAAACGACAGATAGAAGTTGCAGAGAAGGAGTTTGCTAATGCGAAGAGAATCAGACAAGAAGCACAAGCTGAACTTGACAAAGCCTACACTGTTAAAGAACATGCCATTAAACAGATAAACTCTCTCATGCTTCAAATCACTTGTCATGCTTGCAAAAGACAGTTCGGAGCCCAAACGAGGCCGACACCGACAATGTTTGCGGTTCCTCGGCCGGCGCCGGACGAGAACTCATTGGTAGTAAGCTACATGTCGTCTGCTTTAACAACTGAAGGTGGCGAAGAAGAGAACTATAATAATAATGGGAAAAGTGATGGGAAAAATAGTAATAACTCTTTATCATCTCTTTAG 1485 0.4909 MLANNSLSSAPTSETFPCGGDNGGITANKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPAARKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLRTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRSETQEALHQQQQQPLAPACLSRTASSPSQSSETNFSTGPNWNNGLVVLPNKPTTTTTTEAALLLNPTITTSTTTTVAHHHETSSNNKNKYKLCPNLDLRLSTSSSSIIPIDTSTTPNKRDEITRSSNHFRISICDNNRRNSPKESCNSSDKPQGSNGGMMRMVHHEEEAREQLRLAMAEKAYAEEARKQAKRQIEVAEKEFANAKRIRQEAQAELDKAYTVKEHAIKQINSLMLQITCHACKRQFGAQTRPTPTMFAVPRPAPDENSLVVSYMSSALTTEGGEEENYNNNGKSDGKNSNNSLSSL 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0401 494 MobiDBLite consensus disorder prediction 1 45 - -
Lele46g0401 494 SUPERFAMILY beta-beta-alpha zinc fingers 57 156 IPR036236 -
Lele46g0401 494 FunFam protein indeterminate-domain 12-like 37 105 - -
Lele46g0401 494 MobiDBLite consensus disorder prediction 321 344 - -
Lele46g0401 494 MobiDBLite consensus disorder prediction 193 234 - -
Lele46g0401 494 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Lele46g0401 494 Coils Coil 355 403 - -
Lele46g0401 494 Gene3D Classic Zinc Finger 36 100 - -
Lele46g0401 494 MobiDBLite consensus disorder prediction 321 348 - -
Lele46g0401 494 MobiDBLite consensus disorder prediction 1 16 - -
Lele46g0401 494 SMART c2h2final6 58 80 IPR013087 -
Lele46g0401 494 SMART c2h2final6 99 129 IPR013087 -
Lele46g0401 494 SMART c2h2final6 135 162 IPR013087 -
Lele46g0401 494 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lele46g0401 494 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Lele46g0401 494 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 15 439 IPR031140 -
Lele46g0401 494 MobiDBLite consensus disorder prediction 468 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0401 Lele-ChrLele46 2695161 2697763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0401 4 470 C2H2 Transcription Factor Family AT1G25250 46.709 4.11e-121 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele46g0401 zf-C2H2 0.0047 CL0361