Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0398 ATGAGTGCATCGACGACGAGGAAGAAGGTTCAGCGTAAGTGTAAGATCAGAGGGTACACTCTCAAAGTGGACGCTCTTGATGATATCCTTTCCTTCGTAAGTCGATTTGATGCTGCTGATGAAGATGAGGCCATCGATCTCCTCCTCGATCAGCTTGAACACGAATCTCTGAAATCTACAATAATAGACAAAGAACCGGTGCATCGGGTGGTGAGCCTGCTGTTAGAAGCCGAAGCAGCGGTTGAGGAAAGCTCTGATGCTGTTGGCATTGGTTCAGTCTTTCGCGTCGTTGATGCATTCTTAGTCCCTAAATTTCGATACGACTCTATCAAAAAGCAATTCTACGAGCATACAAGCAACTTGCCTATTCATGGGGAAGCATCGGCAAAAGCGGCTCTGTACAGGGACAGATTTCTGTTGCTGTTCCAGAGGCTCTCTCGTGACCAGCATTTTGCAAAGCCGGCTTTTGATTCTGAGTCTTCGCATTTTGGAAGCTGTGAGATATCTCCCATCCAATCTCTGGTTGGGCAAACAGGTAGAAGATGGATCATGGGAGTGATATCACAGCTGGAGGATGGGCATTTTTATTTAGAAGACCTAACTGCGTCGGTTGAAATCAATTTTTCTACTGCTATATCCTTTTGATTCTTTACAGAGAACACCATAATTGTGGCAGAAGGTGAGATGCTGGTGGGGGGTGTTTTTCAGGTTTTAACATGTGGATTCCCCCCATTGGAGGACAGAGATAAGTCACTAAAATTAAGTGGGGGGCATGACTTTTTTGGAGGTGGCACTTTTACCAAAGAGGAAACTATCAGGCTAGCAGAGATGGAAAAGAGAGCAGTCAATGACATGTTTGTTATACTGTCTGATATATGGCTAGACAGTGAAGAGGCTATGGGAAAGCTGCAGACTGTACTGGATGGTTTTGAGAGTGTGGAAGTGGTCCCTTCCTTATTTGTTTTCATGGGAAACTTCTCTTCTCATCCATGTAACCTTTCTTTTCATTCTTACTCAAGCCTCCGGTTGCAGTTTGGTAAGCTAGGGCAAATAATTGCTGCCCATCCACGGCTAATAGAGAAAAGTCGATTTTTGTTCATTCCTGGTCCTGATGATCCAGGTCCTTCAACAGTTCTACCTAGATGTGCTCTGCCTAAATATTTAACTGAGGAGCTCCAGAAGCACGTTCCCAATGCCATATTTTCAAGCAATCCTTGCAGGATCAAATTTTACACTCAAGAAATTGTATTTTTCCGCCAGGATTTGCTGTATAGAATGCGCCGATCATGTTTAATGCCGCCTTCTATGGAAGAAACTGGTGATCTCTTTCAGCATCTTGTTGCTACCATAACCCATCAGAGTCATCTCTGTCCGTTGCCTCTAACAGTACAACCCATCATCTGGAACTACGATCACTGCCTATATCTTTATCCAACTCCACACACGATAATCTTGGGAGACAGAAGTGAGCAAAAAGCTTTCAAATACACAGGAATCACTTGTTTTAATACTGGTTCCTTCTCAATTGACAGCACCTTTGTGGCGTACCGACCATGCTCTCAGGAAGTAGAATTGTCAGCCTTGTAA 1587 0.4405 MSASTTRKKVQRKCKIRGYTLKVDALDDILSFVSRFDAADEDEAIDLLLDQLEHESLKSTIIDKEPVHRVVSLLLEAEAAVEESSDAVGIGSVFRVVDAFLVPKFRYDSIKKQFYEHTSNLPIHGEASAKAALYRDRFLLLFQRLSRDQHFAKPAFDSESSHFGSCEISPIQSLVGQTGRRWIMGVISQLEDGHFYLEDLTASVEINFSTAISFXFFTENTIIVAEGEMLVGGVFQVLTCGFPPLEDRDKSLKLSGGHDFFGGGTFTKEETIRLAEMEKRAVNDMFVILSDIWLDSEEAMGKLQTVLDGFESVEVVPSLFVFMGNFSSHPCNLSFHSYSSLRLQFGKLGQIIAAHPRLIEKSRFLFIPGPDDPGPSTVLPRCALPKYLTEELQKHVPNAIFSSNPCRIKFYTQEIVFFRQDLLYRMRRSCLMPPSMEETGDLFQHLVATITHQSHLCPLPLTVQPIIWNYDHCLYLYPTPHTIILGDRSEQKAFKYTGITCFNTGSFSIDSTFVAYRPCSQEVELSAL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0398 528 Pfam DNA polymerase alpha/epsilon subunit B 286 491 IPR007185 GO:0003677|GO:0006260
Lele46g0398 528 PANTHER DNA POLYMERASE EPSILON SUBUNIT B 4 528 IPR016266 GO:0003677|GO:0006261|GO:0008622
Lele46g0398 528 Gene3D - 1 72 - -
Lele46g0398 528 PIRSF DNA_pol_epsilon_2 1 528 IPR016266 GO:0003677|GO:0006261|GO:0008622
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0398 Lele-ChrLele46 2671892 2676720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0398 17 485 Core DNA Replication Machinery Family AT5G22110 71.489 0.0 694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g0398 46 2671892 2676720 Lele47g1022 47 16111858 16122601 hybridization
Lele46g0398 46 2671892 2676720 Lele48g1088 48 15667971 15678143 hybridization