Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0394 ATGACAGATAAGGAAGTTTCCTGTACTGGTTCGAATGCCGAAACTGTTTGTGAAATGGGAAATGGAGACAGGAAAACAGATTCCGATGATTCTCAAAGCCAATTGTCTCATCGGGAGGGAGAAAATGTATACCCTGCAGAGTCTTCAAGAGGTTTTGTACCATATAAAAGATGTTTAGCCAAGAGATGCAAATTCAGCTTTTGTTGCATTGGACAGGAAGAAGGCGCAACGAGCTATTATGCCTATAGCTTATTTTGCTGGCATGGAATCTTGAGTCCTATAGATCGAGACAGACAGACAATTAATGTCGACGTGTTTAAGAAGAGAGGAATAGAACCTTTGTCCCATTGGATTATGATGGATTCTACGGGGAGGATTCTCAAGATGGGTCTTCAACCAAATACGATAACTTTGAATACGATATTAAAAGGGCTCTGTGTTAGAGAATGTCATATCTATGTGTGGTATATTGTTTACGAGATGCATGAAAGCGGTCTTGCCCCTGATATAGTCACCTATGGTATTTTGCTAGATGCACTTTGCAAAAGTGAAAATCTGGATCTGGCGATTATGTTATTTAAGCAAATGGTTGCCCAGAGAACTCAATCTAATGTGTACACATACAGTATACTTATCAAAGGCTCTCATCTAGATGTCTACACATATACCGTTATGATCAATGGGCTTTGTAGAGAAGAACAAACAAAAACAGTCAAGCAGCGTTCAGTTATTCAATCGGAAGAAAAGCCCTTCCCTTCTCTGCGTCTCCTTCGATTCGAAGCTTTCGGAGTTCGCCGTGTCAGCCTCGTCTGCTTAGCCATGCATTATCTCCACCTTGTGCGTCCAGTTTCAAGCATGAGACAGTGGAAAGAAGCTACCCAATTGCTCCATGAAATGGTATTGAAAAACATCAAACCTGTTGTTTGTACATTTAATATATTGATTGGTGCATTTTGTAAAGAAAGGAGGATCGTTGAAGCTCAAACCGTGTTTGCTAAGATGATGAAATGTGGTGAGAGACCAAATGTTGTAAGTTACAATTCTTTAATGTATGGATATTGTCTGGTGAATAATGCGAGTGAGACAAAGGAAGTATTCAATAGCATGGTTCAAAGTAGTTTGGTTGCTGATGTAGCTAGTTATAATATTTTGATCGACGGATTTTGTAAGATTAAAATGGTGGGTGCGGCTATAAATCTCTTTAGAGAAATGTGTCATAAAAACTTAGTTCCTAATACAATAACATATAGTTGTCTTATTGATAGCCTGTGCAAATTAGGGAGAAGGTTATATACGCGGGATCTTGTTTACGAGATGCAAGAAAGAGGTCATGCCCTTGATATAGTCACCTATAGCATTTTGCGAGATGTACTTTGCAAAAGTGGAAATCTTGAGCAGGGGATTGCATTGTTTAGGCAAATGGTTTCTCAGAGAATTCAACCTAATGTGTACACATATTCTATACTTATTGATGGCTTGTGTAAAGGCGGTAGACTAAATGATGCTCGAGAGATTTTTCAAAACCTTCTGATCAACAGCTATGGTCTAAATGTCTACACATACAGCATTATGATCAAAGTGCTTTGTAGAGAAGGTTTGTTTGATGAAGCTATGGCCTTGCTTTCGAAAATGAGAGCAAATGGCTGTCTCCCTAATTCAGTAACATATGGAACAATTCTTCAAGCTCCTTTGAAAAAAGGTGAGAATGATAAGGCTAAAAAGCTTCTACGTGAAATGAGGGGTAGGGAAAAATACCACTTGAAAGCAGAGTCAAGACGTGGTCAAACTCACCTTTTGGATATTGAAGCGGGTAGTAACGCTCATTTGGTCTATAGGAGTGCCATCCACGGGATATTTTTGGGTGAAATGAAAACACAATCGAGGCTCGTTGGGGCCAATCGTGTGACCGCCTTTGGTGGTACCCGACAAACCCACTCCCCCTGGGCCCCACACATACCTGATACGTCAGCGCAGCCACTGGAAGAGTATCGAGGAAGGAAGGAGGTGATATGGACAGAGTGGAAACGGTTGTTTCTGTCTGCTGTGCCCATTATGGTAAGAAAAAGGAGAACTGAAGCACCTAGTGCAGGTGAAAGTTCTGAGACTCAGGAGAGTGGGGGCATTAGTCGAGGACCTCAACGCCATGTTGAAAGAAGTGCTCCACCCCCACAGCAGGCAACAGGAGGGGGAGGATCCCAAGGAGGTAGAGGTTGGGGTCCACAAGGAGGACGGGGAGGTTATACTGGGGGCCGGGGTCGTGGGATGCCCCAACAGCAGTATGGTGCTCCCCCTGAATATCAAGGAAGGGGGAGGGGAGGTTACTCTCAGCAGTTAGGTCGTGGACGTCGTGGTGGGGACGATGGCAGTGGCCGTGGTAGTGGACCTTCTTATGGTGGCCCATCTGGACCTGAAGCTCCCGAACTGCACCAAGATACCCCTGTTCCACATCATGCTGGGGTGATTCCTCAGTTCACAATGTCAGAGGCCAGTGCTTCTTCGCAACAATTTGATCCCTCACAGGTGGAACAACAAATGGGGCAGATGACTATTCATTCAGAATCCGTTTCTCCTGCCCCATCCTCAAGTAAATCAGTGAGGTTTCCCCTTAGGCCCGGAAAGGGTAGCTATGGCACCAAGTGTGTTGTTAAGGCTAACCACTTCTTTGCGGAGTTACCTAATAAAGATTTGCACCAGTATGATGTCACTATCACTCCAGAAGTGACATCAAGGGGTGTCAACCGTGCTGTTATGGAGCAGCTGGTGAGGCTTTATCGAGAGTCTCATCTGGGTAAGAGACTTCCTGCATATGACGGGCGCAAGAGCCTTTACACTGCGGGTCCTCTTCCTTTCCTTTCAAAGGAGTTTAGAATCACTCTCCTTGATGAAGATGATGGATCGGGAGGGCCAAGAAGAGAGAGGGAGTTCAAAGTTGTAATAAAATTGGCTGCCCGGGCAGATCTACATCATCTAGGACTCTTCCTGCAGGGAAGGCAGACTGATGCTCCTCAAGAAGCTCTTCAGGTTCTTGACATCGTCCTGCGTGAACTACCTACCTCTAGGTATTGTCCTGTGGGGAGATCATTTTATTCACCGTATCTGGGTAGAAGGCAACCGTTAGGTGAGGGATTGGAAAGTTGGCGTGGTTTCTATCAAAGTATTCGTCCTACTCAGATGGGGTTATCTCTAAACATTGATATGTCCTCAACTGCATTTATTGAACCATTGCCGGTAATAGAATTTGTTACTAAGTTGCTCAATCGGGATGTCATCTCCCGCCCATTGTCTGATGCAGATCGCGTAAAGATAAAGAAAGCACTTCGGGGTGTCAAAGTTGAAGTGACACACCGTGGAAATATGAGAAGAAAATATCGCATCTCTGGTCTGACTTCACAGGCAACCCGAGAGCTAACGTTTCCCGTTGATGCGAGTGGAACAATGAAGTCTGTTGTTGAGTATTTTTCGGAAACATATGGATTTGTCATTCAACATACCCAATGGCCTTGCTTGCAAGTGGGCAATGCACAGAGACCAAACTATTTACCAATGGAGGTTTGTAAGATTGTAGAAGGTCAAAGGTACTCGAAGAGATTGAATGAAAAGCAGATTACTGCTTTGCTCAAAGTCACATGCCAGCGTCCTGTTGAAAGGGAGCGTGATATTATGCAGACAGTTCATCATAATGCTTACCGTGATGATCCTTATGCTAAAGAGTTTGGGATTAAAATCAGTGAAAAGCTGGCTCAAGTTGAAGCTCGCATCCTTCCTGCACCTCGGCTTAAGTACCATGATACAGGTAGAGAAAAGGATTGTCTACCTCAAGTGGGCCAATGGAATATGATGAATAAGAAAATGGTCAATGGTGGGACAGTCAACCACTGGATCTGCATAAACTTTTCCAGAAATGTCCAAGATAGTGTTGCAAGTGGGTTTTGTTATGAACTTGCTCAAATGTGTGGTGTATCTGGCATGGCATTCAACTCTGAGCCAGTACTTCCCGCACTTAGTGCCCGTCCTGATTTGGTGGATAGGGTTCTCAAAACTCGATATCATGACGCAAAAACCAAACTGAGGGGGAAGGAGCTTGATCTTCTGATTGTTATTTTGCCTGATAATAATGGCTCTGTTTATGGTGATCTGAAACGAATATGTGAGACAGATCTTGGGGTTGTTTCTCAGTGCTGTTTGACTAAGCATGTCTATAAAATGAGCAAGCAGTATCTTGCAAATGTTGCCTTGAAAATTAATGTAAAAGTAGGTGGAAGGAACACAGTGCTTGTTGATGCCCTTTCACGGCGTATACCTCTAGTGAGTGACCGACCGACAATTATTTTTGGTGCTGATGTTACTCACCCACATCCTGGAGAGGATTCAAGTCCATCCATAGCAGCTGTTGTGGCCTCTCAAGATTGGCCTGAAATCACAAAGTATGCTGGTTTGGTGTGTGCTCAAGCTCATCGACAGGAGCTCATTCAAGACCTCTTCAAACAATGGCAGGATCCGGTCAGGGGAACAGTAACTGGTGGAATGATCAAGGAGCTTCTTATATCTTTCCTGAGGGCCACTAGGCAGAAGCCGCAGCGCATTATATTTTACAGGGATGGTGTGAGTGAGGGGCAGTTCTATCAAGTTTTACTGTTTGAGCTTGATGCTATCCGCAAGGCATGTGCATCCCTGGAACCTAATTATCAGCCTCCTGTCACATTTGTGGTGGTTCAGAAGCGCCATCATACTAGGCTCTTTGCCAGCAACCATCATGACAGGAGTTTTGTTGACCGGAGCGGGAACATATTGCCCGGCACTGTTGTAGACTCTAAGATTTGTCATCCTACTGAGTTTGATTTTTATCTTTGTAGCCATGCTGGAATCCAGGGAACAAGCCGTCCCGCTCACTACCACGTGTTATGGGACGAAAACAATTTTACAGCCGATGCACTGCAAACTTTGACAAACAACCTTTGTTACACTTATGCTAGATGCACTCGTTCTGTTTCAATTGTGCCGCCTGCATATTATGCTCATTTGGCTGCATTCCGAGCTCGATTTTATATGGAACCCGAGACGTCAGAGAGTGGATCCATGACCAGTGGTGCGGCTGCTGCTCGTGGAGTTGGTGCAGTGCGGAGCACTCGGCCACCGGGTGGTGATACCACTGTTAGGCCTCTCCCAGCTCTTAAGGAGAATGTCAAGAGGGTTATGTTCTATTGTTAA 5208 0.4457 MTDKEVSCTGSNAETVCEMGNGDRKTDSDDSQSQLSHREGENVYPAESSRGFVPYKRCLAKRCKFSFCCIGQEEGATSYYAYSLFCWHGILSPIDRDRQTINVDVFKKRGIEPLSHWIMMDSTGRILKMGLQPNTITLNTILKGLCVRECHIYVWYIVYEMHESGLAPDIVTYGILLDALCKSENLDLAIMLFKQMVAQRTQSNVYTYSILIKGSHLDVYTYTVMINGLCREEQTKTVKQRSVIQSEEKPFPSLRLLRFEAFGVRRVSLVCLAMHYLHLVRPVSSMRQWKEATQLLHEMVLKNIKPVVCTFNILIGAFCKERRIVEAQTVFAKMMKCGERPNVVSYNSLMYGYCLVNNASETKEVFNSMVQSSLVADVASYNILIDGFCKIKMVGAAINLFREMCHKNLVPNTITYSCLIDSLCKLGRRLYTRDLVYEMQERGHALDIVTYSILRDVLCKSGNLEQGIALFRQMVSQRIQPNVYTYSILIDGLCKGGRLNDAREIFQNLLINSYGLNVYTYSIMIKVLCREGLFDEAMALLSKMRANGCLPNSVTYGTILQAPLKKGENDKAKKLLREMRGREKYHLKAESRRGQTHLLDIEAGSNAHLVYRSAIHGIFLGEMKTQSRLVGANRVTAFGGTRQTHSPWAPHIPDTSAQPLEEYRGRKEVIWTEWKRLFLSAVPIMVRKRRTEAPSAGESSETQESGGISRGPQRHVERSAPPPQQATGGGGSQGGRGWGPQGGRGGYTGGRGRGMPQQQYGAPPEYQGRGRGGYSQQLGRGRRGGDDGSGRGSGPSYGGPSGPEAPELHQDTPVPHHAGVIPQFTMSEASASSQQFDPSQVEQQMGQMTIHSESVSPAPSSSKSVRFPLRPGKGSYGTKCVVKANHFFAELPNKDLHQYDVTITPEVTSRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFLSKEFRITLLDEDDGSGGPRREREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTSRYCPVGRSFYSPYLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIEFVTKLLNRDVISRPLSDADRVKIKKALRGVKVEVTHRGNMRRKYRISGLTSQATRELTFPVDASGTMKSVVEYFSETYGFVIQHTQWPCLQVGNAQRPNYLPMEVCKIVEGQRYSKRLNEKQITALLKVTCQRPVERERDIMQTVHHNAYRDDPYAKEFGIKISEKLAQVEARILPAPRLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNHWICINFSRNVQDSVASGFCYELAQMCGVSGMAFNSEPVLPALSARPDLVDRVLKTRYHDAKTKLRGKELDLLIVILPDNNGSVYGDLKRICETDLGVVSQCCLTKHVYKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFLRATRQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDRSFVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSESGSMTSGAAAARGVGAVRSTRPPGGDTTVRPLPALKENVKRVMFYC 1735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0394 1735 Pfam PAZ domain 1098 1205 IPR003100 GO:0005515
Lele46g0394 1735 Gene3D paz domain 1068 1193 - -
Lele46g0394 1735 Pfam Mid domain of argonaute 1272 1345 IPR032473 -
Lele46g0394 1735 Pfam Argonaute linker 2 domain 1215 1261 IPR032472 -
Lele46g0394 1735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 482 516 IPR002885 -
Lele46g0394 1735 SMART PAZ_2_a_3 1079 1211 IPR003100 GO:0005515
Lele46g0394 1735 Pfam N-terminal domain of argonaute 878 1013 IPR032474 -
Lele46g0394 1735 CDD PAZ_argonaute_like 1074 1188 - -
Lele46g0394 1735 FunFam Protein argonaute-2 1068 1194 - -
Lele46g0394 1735 SUPERFAMILY PAZ domain 881 1226 IPR036085 GO:0005515
Lele46g0394 1735 FunFam protein argonaute 10-like 1432 1735 - -
Lele46g0394 1735 Gene3D Tetratricopeptide repeat domain 270 371 IPR011990 GO:0005515
Lele46g0394 1735 Gene3D Tetratricopeptide repeat domain 372 442 IPR011990 GO:0005515
Lele46g0394 1735 Gene3D Tetratricopeptide repeat domain 514 584 IPR011990 GO:0005515
Lele46g0394 1735 ProSiteProfiles Piwi domain profile. 1363 1684 IPR003165 GO:0003676
Lele46g0394 1735 Gene3D Tetratricopeptide repeat domain 118 241 IPR011990 GO:0005515
Lele46g0394 1735 Gene3D Tetratricopeptide repeat domain 443 513 IPR011990 GO:0005515
Lele46g0394 1735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Lele46g0394 1735 FunFam Argonaute 10 1253 1426 - -
Lele46g0394 1735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 552 582 IPR002885 -
Lele46g0394 1735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 517 551 IPR002885 -
Lele46g0394 1735 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 855 1685 - -
Lele46g0394 1735 CDD Piwi_ago-like 1233 1683 IPR045246 -
Lele46g0394 1735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Lele46g0394 1735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Lele46g0394 1735 Pfam Argonaute linker 1 domain 1023 1073 IPR014811 -
Lele46g0394 1735 Gene3D - 1432 1735 IPR036397 GO:0003676
Lele46g0394 1735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 446 IPR002885 -
Lele46g0394 1735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Lele46g0394 1735 MobiDBLite consensus disorder prediction 1701 1720 - -
Lele46g0394 1735 SMART Piwi_a_2 1363 1684 IPR003165 GO:0003676
Lele46g0394 1735 MobiDBLite consensus disorder prediction 689 870 - -
Lele46g0394 1735 MobiDBLite consensus disorder prediction 20 36 - -
Lele46g0394 1735 Pfam PPR repeat 220 235 IPR002885 -
Lele46g0394 1735 TIGRFAM PPR: pentatricopeptide repeat domain 309 343 IPR002885 -
Lele46g0394 1735 TIGRFAM PPR: pentatricopeptide repeat domain 344 377 IPR002885 -
Lele46g0394 1735 TIGRFAM PPR: pentatricopeptide repeat domain 380 413 IPR002885 -
Lele46g0394 1735 TIGRFAM PPR: pentatricopeptide repeat domain 171 200 IPR002885 -
Lele46g0394 1735 TIGRFAM PPR: pentatricopeptide repeat domain 414 447 IPR002885 -
Lele46g0394 1735 TIGRFAM PPR: pentatricopeptide repeat domain 519 552 IPR002885 -
Lele46g0394 1735 TIGRFAM PPR: pentatricopeptide repeat domain 449 483 IPR002885 -
Lele46g0394 1735 TIGRFAM PPR: pentatricopeptide repeat domain 484 509 IPR002885 -
Lele46g0394 1735 Pfam Piwi domain 1364 1683 IPR003165 GO:0003676
Lele46g0394 1735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Lele46g0394 1735 ProSiteProfiles PAZ domain profile. 1075 1189 IPR003100 GO:0005515
Lele46g0394 1735 SUPERFAMILY Ribonuclease H-like 1349 1684 IPR012337 -
Lele46g0394 1735 MobiDBLite consensus disorder prediction 1 16 - -
Lele46g0394 1735 Pfam Glycine-rich region of argonaut 761 856 IPR024357 -
Lele46g0394 1735 SMART DUF1785_2 1022 1074 IPR014811 -
Lele46g0394 1735 MobiDBLite consensus disorder prediction 825 863 - -
Lele46g0394 1735 Pfam PPR repeat family 377 425 IPR002885 -
Lele46g0394 1735 Pfam PPR repeat family 306 354 IPR002885 -
Lele46g0394 1735 Pfam PPR repeat family 447 495 IPR002885 -
Lele46g0394 1735 Pfam PPR repeat family 517 562 IPR002885 -
Lele46g0394 1735 Pfam PPR repeat family 168 214 IPR002885 -
Lele46g0394 1735 MobiDBLite consensus disorder prediction 1 41 - -
Lele46g0394 1735 Gene3D - 1253 1426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0394 Lele-ChrLele46 2625478 2645679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0394 765 1735 Eukaryotic Initiation Factors Gene Family AT1G48410 80.164 0.0 1582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g0394 46 2625478 2645679 Lele47g1029 47 16159424 16164784 hybridization
Lele46g0394 46 2625478 2645679 Lele48g1093 48 15711708 15717484 hybridization