Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0379 ATGTCTTCTGCCGGCGGTGGCGGCAGAGGGAACGGTGGCGGCGGCGGGGTTACCTTCAGCGGTTCTTCTCAACTCTATTTTTGCCACCAGTGCAAAGCCACCGTATCCATTACGCCTTCATCTTCCGGTGATCTCGTTTGTCCGAATTGCAACGGCGGCTTCGTTGAGGAAGTCGATAATCCAAGCCCTAATTTTACTAATCCCTTCTTTTCATTTAGCTCTGAGTTTGGCAGCGGCGGCGGCGGCCCTGTAGTATTTTCTACCACTTCCACCGGCGGTGGTAGTGGTGCTGGTGGACCGATTTTCGACGATCTTTCTACTCTTTTTGGTGGTGGACCTAATGGATCGTCTCCGTTCGGAGAAACTGATGCGTTCAACCCTTTTGTGTTTCTTCAGAATTATCTTCAAACCCTGAGAGCCGGTGGAGCTAATGTTCAATTTGTGATAGAGAACTCTGGAGACCCTAGTGTAAACTTCCGTCTGCCCACGAATCTCAATTTTGGTGATTATTTTTTTGGACCTGGCCTCGAGCAATTGATTCAACAGCTTGCGGAGAACGATCCTAACCGACATGGGACGCCCCCAGCTTCGAAATCTGCCATCGAGGGCCTCCCTACTATTAAGATTTCAGAGGAGTTACTGGCTTCGGATTCATCGCAGTGTGCCGTTTGTAAAGATACGTTTGAGCTTGGGGAAGAGGTCAAGCAGATGCCATGTAAACATATCTATCATTCAGATTGCATTTTGCCTTGGTTGGAATTGCATAATTCTTGTCCTGTTTGCCGGTACGAGTTACCAACGGATGATCCTGACTACGAGCAACAAACTCGTGGGGCTTCTGCCCAGGTGAATCAAAATCAATCTGCAGGGGGAGGTGTGTCTGCTGGTTCTTCTGAAGGCGGTAATAGTGGCAGTGGCGGTAATGGTGCCAGTGGTGGCAGTGGCAGTGCAGCATCTGGAGAAGACTCACCGAGAGAACGCAGGTTTAGGGTTTCTTTGCCTTGGCCTTTTAGGCAGTTGGCTTCCATAGCAGAGACTAGCAGTACTGGGAATAGCAACGCCAGCGGAAATAATAGTGAGGAATCAAATTCTGGAAGAAGGGGAAACCAAAATTTTGAGTCGGAGACTAGACAAGAAGATCTCGATTAA 1149 0.4909 MSSAGGGGRGNGGGGGVTFSGSSQLYFCHQCKATVSITPSSSGDLVCPNCNGGFVEEVDNPSPNFTNPFFSFSSEFGSGGGGPVVFSTTSTGGGSGAGGPIFDDLSTLFGGGPNGSSPFGETDAFNPFVFLQNYLQTLRAGGANVQFVIENSGDPSVNFRLPTNLNFGDYFFGPGLEQLIQQLAENDPNRHGTPPASKSAIEGLPTIKISEELLASDSSQCAVCKDTFELGEEVKQMPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYEQQTRGASAQVNQNQSAGGGVSAGSSEGGNSGSGGNGASGGSGSAASGEDSPRERRFRVSLPWPFRQLASIAETSSTGNSNASGNNSEESNSGRRGNQNFESETRQEDLD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0379 382 Pfam zinc-ribbon 24 57 IPR039525 GO:0061630
Lele46g0379 382 ProSiteProfiles Zinc finger RING-type profile. 221 262 IPR001841 -
Lele46g0379 382 SMART ring_2 221 261 IPR001841 -
Lele46g0379 382 MobiDBLite consensus disorder prediction 273 318 - -
Lele46g0379 382 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 118 266 - -
Lele46g0379 382 MobiDBLite consensus disorder prediction 341 371 - -
Lele46g0379 382 CDD RING-H2_RNF126_like 220 262 - -
Lele46g0379 382 FunFam E3 ubiquitin-protein ligase RING1-like 182 268 - -
Lele46g0379 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 268 IPR013083 -
Lele46g0379 382 Pfam Ring finger domain 220 262 IPR001841 -
Lele46g0379 382 MobiDBLite consensus disorder prediction 271 382 - -
Lele46g0379 382 SUPERFAMILY RING/U-box 200 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0379 Lele-ChrLele46 2535290 2536438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0379 162 314 C3H Transcription Factor Family AT5G01980 43.791 4.68e-38 141