Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0326 ATGGTCCTGATTGGAGGGAAGCCATTGAAGCGGATGAAGACGAGAGTAACGGCTGATTTCTACGACTTCCTCACTTTTCCGTCGCCATCACTCTTCGTGGCAGATGAGTTATCCGGCGGACCCTTCCGGACGAACGTGCGCTCGTTCCTTTCGAAGCATGCGCTGCTCCCACCGCCGTCAGCACTGTTTCCTCACCTGCTGACGTGGCAGTTCCTTTTCCGAGTCGGAGACCAGACGGACGGTCCGGACTCGACGCCTTCGGTGGTCTGTCTCGACGTCGTGGAAGAGGATGTGGCCAGATCCAGATCAGTCTACTGCGATCAGTGTCGAGTTGTTGGTTGGAGTGACCACCCAGTATGCAGGAAACGTTACCACTTTATAATCAAGGCTGATGGTAGCTCCATCGGTGGGTACCACAAGCCATGCATGTGCTGTGGAGATATCTTGCATTTGTCAGAATCCAAGTGCAAGTCATGCAACCATGTGACGACCACTGATGATGTTGAAGACTGGGTGTATCATCAGTTAGAAAACACGACCCATCTTTTACATGGTGTTGTTCATGCAAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGGGAAGGGGGCTCGGCAGTTCTTTCTGGCTGTCATATCATGAACTTCTGGGATCGTCTCTGCAAGTTACTTGGTGCCAGAGAAGTTAGTGTAATGGATGTTTCAAAGAAATATGGGCTGGAGTACCGCCTGATCCATGCTATTACAAAGGGGCATCCCTGGTATGGTGATTGGGGCTACCAATTTGGCACTGGTAGCTATGGTCTCACGCATGAAGCATATAAGTCTGCAGTTGAATGCCTTTCCAATTTACCATTGTCCCTATTCCTCTCTGAAGGACAGAGACCTGATTCTCGATTGCGGGACACAATCTCATATTACCAATCTCTGTCTGAAACTGGGCTTGTAAATATAAAGGATCTCTTTTGTTTTTTGATTGGTTTGATTCATGATGCTCGCATGACAGTGTCAAGGTCTGATGATGTCACTTGCAAGAAGCACCGTAGTAATGCTGCAGGAGTGTCATGTTTCTCATCAACGAGTGACATTGAACGTGTGGAGGGAGCAATGCTCAAAGTATTGCGTGCAGTGTCAGGATCCAATTGGGTGAGCTGGCGTACTCTTAAGGGTGCTATCTGCAAAGTGGCCTCTCCAGAGCTTCTTGACTATTGTCTTGGAGAACTAGGAGGAAAAGCAATATTTGGCGGTATGGTTGTCAATACCCGATGCAATCCTGTTACTGGAGCTTTTGAGTACAGACTAGAGGCAGGGAACAGCTTTTCCTATGGGACAACAGCAAGCAATAAATATTTGCGTTCTAAGTATCCATCTGAAGCGAATCTCCTGCACGACTTGAGATATTTATACGAGTATTTGCTTCCTCCACATAAGATGCCAAGCTATGACTCTGAGGGTACAAGGACTGCAGCAATGAGCTCTGCTCAGAAACTTCTTGACTGCAAGCATTTTGTAAAAGATTATAGACCTGAGATGTTGCCAATGACAAGCTTGAATAGTATACGCCTCTCATGTCAGATAGTAGTAGTTGATGAAACTGATGAAGCTCTAACTGATGAAGCTCTCGCAAGTCCTCCCCCAGAATTAATTGTCCTGCCCTGGAATGCAACTGTGTCCGACCTCAAGACTGAAGTATCAAATGCTTTTCAAGATGTATATCTCATGTTTAAAAGATTTCAAGTTGATGAGCTTTTTGGCTGTAGCAGTGCAGATGATTCCACTTTGGTCAAACTCTTGATAGGATCAATTGAATTGGTTCGTGTCAAGGGAAAATGCATTGGGAAGAATGTATTGAGCAAGTTCCAAAGGGAACGTGGACTTGAGAGGTGGACCGTTGATTGCAGCTGTGGGGCCAAAGATGATGATGGGGAGAGAATGTTGGCATGTGATGTTTGTGGGGTGTGGAGGCACACTAGGTGTTCTAATATTCATGATGCAGATCCTGTCCCTGTGAGGTTTTTTTGCCCAAGATGCCAAAATTTTGAGTTGAGGCCGAATTTAAGTGGACACTGA 2070 0.4647 MVLIGGKPLKRMKTRVTADFYDFLTFPSPSLFVADELSGGPFRTNVRSFLSKHALLPPPSALFPHLLTWQFLFRVGDQTDGPDSTPSVVCLDVVEEDVARSRSVYCDQCRVVGWSDHPVCRKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYHQLENTTHLLHGVVHANGYGHLLRVNGREGGSAVLSGCHIMNFWDRLCKLLGAREVSVMDVSKKYGLEYRLIHAITKGHPWYGDWGYQFGTGSYGLTHEAYKSAVECLSNLPLSLFLSEGQRPDSRLRDTISYYQSLSETGLVNIKDLFCFLIGLIHDARMTVSRSDDVTCKKHRSNAAGVSCFSSTSDIERVEGAMLKVLRAVSGSNWVSWRTLKGAICKVASPELLDYCLGELGGKAIFGGMVVNTRCNPVTGAFEYRLEAGNSFSYGTTASNKYLRSKYPSEANLLHDLRYLYEYLLPPHKMPSYDSEGTRTAAMSSAQKLLDCKHFVKDYRPEMLPMTSLNSIRLSCQIVVVDETDEALTDEALASPPPELIVLPWNATVSDLKTEVSNAFQDVYLMFKRFQVDELFGCSSADDSTLVKLLIGSIELVRVKGKCIGKNVLSKFQRERGLERWTVDCSCGAKDDDGERMLACDVCGVWRHTRCSNIHDADPVPVRFFCPRCQNFELRPNLSGH 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0326 689 CDD PHD_MMD1_like 632 677 - -
Lele46g0326 689 ProSitePatterns Uncharacterized protein family UPF0054 signature. 184 194 IPR020549 -
Lele46g0326 689 SMART PHD_3 632 678 IPR001965 -
Lele46g0326 689 SUPERFAMILY FYVE/PHD zinc finger 620 679 IPR011011 -
Lele46g0326 689 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 15 681 - -
Lele46g0326 689 Pfam PHD-finger 633 679 IPR019787 -
Lele46g0326 689 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 681 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0326 Lele-ChrLele46 2194863 2199658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0326 38 677 PHD Transcription Factor Family AT5G22260 29.028 3.62e-83 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele46g0326 PHD 1.4e-08 CL0390