LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele46g0303	ATGGGGTTTTCTCTTTCACCACTTACTCTCATCTTCTCACTCCTAGTCTTTGCTCTGTTGAACCCAAAATGGGTATGTGGGGATACAGAGCTAAGAGCACTTATGGATATCAAAGCCGCTCTGGACCCAGAAAGCCATTATCTTTCCTCGTGGACTATTAATGGAAAACCATGTGATGCTTCTTCGTTCGAAGGAGTGGGTTGTAACGAGAAGGGTCAAGTGGCTAACATTTCATTGCAGGGAAAAGGTCTCACAGGGAAGCTTTCACCCGCCATTGCAGAGCTCAAGCAACTTACAGGACTTTACTTGCATTATAACTCCTTGCAGGGAGCCATTCCCGGAGAAATTGCCAACTTGACTAACCTAAGTGACTTGTATTTGAATGTGAATAATCTCTCTGGTGAAGTCCCTCCCGAGATAGGCAAAATGGAGAACCTTCAGGTTTTGCAGCTTTGCTATAATCAGTTGACGGGAAGCATACCAACACAGCTTGGTGCCCTGAAGAAGCTTGTAGTTCTTGCTCTGCAGTCAAATCAATTAGCTGGTGCTATCCCTGCAAGTTTAGGTGATTTGGGAATGTTAATGAGGCTCGATCTAAGCTCTAATCACCTCTTCGGTTCGCTTCCCTCTACTTTAGCCGGTGCTCCTTCCCTTCGAGTTCTAGATGTTCGCAACAACACCCTATCTGGAAATGTACCTCCTGCTCTGAAGAGGCTAGATGATGGATTTTTGTATGAGTACAATCTGGGATTATGTGGAGTCGGGTTTTCATCCTTGAAAACTTGCAATGATTCAGATCATAGTAATCCTGATAGACCTAATAAACCTTATGGAACCAGTTTTGGCAGTACATCGGCAAAAGATATACCGGAAACTGCGAATGTGCCACTTCCTTGCAATGGAACTCAGTGCCAAAACTCATCAAAACCCAAACAATCAGCATCTATCGTTGTTGGCATAGTTGTGTTTGCAATTGTAGTGCCAACAATTGGCGTTTTAACTTTCACACAATACCGTTGGCGAAAACAAAAGCTTAGGAACTCGTTTGATATCTCGGATAACAGTCTAATCACGATGAACCAAGCCAAGTGTACATTCCAGAAAAATGGATCTCCTTTGGCCAGCCTTGAGTACTCTAATGGCTGGGACCCTTTAGCAGAAAGCCGGAATTTCATGGGGAATGATAGCCATGATGATGTGTTCCATAGTTTCAGGTTCAACTTGGAAGAGGTTGAGACTGCTACTCAGTATTTCTCGGAGTCGAACTTGTTGGGTAAGAGTATCTTCAGTGCGACGTATAAGGGAATGTTAAGAGATGGATCTGTTGTTGCCGTTAAAAGAATCAGTAAAACAAGCTGCAAGAGTGATGAGTCTGAGTTTTTGAAGGGACTACACATTTTGACATCACTGAGGAATGAGAATTTAGTGAGGTTGAGAGGATTTTGTTGCTCGAGGGGGCGAGGCGAGTGCTTTCTGGTTTATGATTTCGTTCATAATGGAAATCTATCGTGCTACCTCGATGTCGGCAAAGGCGAAGGCGAAGGCGAAGGCCTTGAATGGTCTACTAGAGTTTCTATTGTTAAAGGCATTGCTAAAGGAATAGCATATTTGCATGCGTACGAGCCAAGCAAGCCAGCCTTTGTTCACCAAAACATCTCGGCTGAGAAAGTGCTCATTGATCAGCGATTCAACCCGATGCTTTCGGATTCTGGCCTTCACAATCTTCTTACTGATGACATTGTCTTCTCAGCACTGAAAGCTAGTGCAGCAAAGGGTTATCTAGCTCCTGAATACACGACCACCGGGAGGTTCACGGAGAAAAGCGATGTGTATGCTTTCGGAGTGCTTCTTTTCCAGATCCTCTCGGGGAAAAGGAAGATCACTAGCTCGATGCGCCTCGCTGCAGAATCCTCCAGACTCGAAGAACTCATTGACCCGAATCTCCATGGCAGATTCATTGAATACGAGGCTGCAAATCTCGCGAAGATGGCTTTGCTTTGCTCCCACGAGTCTCCTTTTGAGAGGCCATTGATGGAAGCCATTGTTTTAGAACTTGCAAGTTTCAATATTTGTCTCTGA	2079	0.4459	MGFSLSPLTLIFSLLVFALLNPKWVCGDTELRALMDIKAALDPESHYLSSWTINGKPCDASSFEGVGCNEKGQVANISLQGKGLTGKLSPAIAELKQLTGLYLHYNSLQGAIPGEIANLTNLSDLYLNVNNLSGEVPPEIGKMENLQVLQLCYNQLTGSIPTQLGALKKLVVLALQSNQLAGAIPASLGDLGMLMRLDLSSNHLFGSLPSTLAGAPSLRVLDVRNNTLSGNVPPALKRLDDGFLYEYNLGLCGVGFSSLKTCNDSDHSNPDRPNKPYGTSFGSTSAKDIPETANVPLPCNGTQCQNSSKPKQSASIVVGIVVFAIVVPTIGVLTFTQYRWRKQKLRNSFDISDNSLITMNQAKCTFQKNGSPLASLEYSNGWDPLAESRNFMGNDSHDDVFHSFRFNLEEVETATQYFSESNLLGKSIFSATYKGMLRDGSVVAVKRISKTSCKSDESEFLKGLHILTSLRNENLVRLRGFCCSRGRGECFLVYDFVHNGNLSCYLDVGKGEGEGEGLEWSTRVSIVKGIAKGIAYLHAYEPSKPAFVHQNISAEKVLIDQRFNPMLSDSGLHNLLTDDIVFSALKASAAKGYLAPEYTTTGRFTEKSDVYAFGVLLFQILSGKRKITSSMRLAAESSRLEELIDPNLHGRFIEYEAANLAKMALLCSHESPFERPLMEAIVLELASFNICL	692

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele46g0303	692	FunFam	Protein NSP-INTERACTING KINASE 2	497	689	-	-
	Lele46g0303	692	Pfam	Leucine rich repeat N-terminal domain	29	69	IPR013210	-
	Lele46g0303	692	SUPERFAMILY	L domain-like	26	238	-	-
	Lele46g0303	692	Gene3D	Phosphorylase Kinase; domain 1	388	496	-	-
	Lele46g0303	692	FunFam	Protein NSP-INTERACTING KINASE 2	141	263	-	-
	Lele46g0303	692	FunFam	Leucine-rich repeat receptor-like kinase	29	139	-	-
	Lele46g0303	692	PANTHER	LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1	164	686	-	-
	Lele46g0303	692	MobiDBLite	consensus disorder prediction	263	285	-	-
	Lele46g0303	692	Gene3D	Ribonuclease Inhibitor	141	262	IPR032675	-
	Lele46g0303	692	ProSiteProfiles	Protein kinase domain profile.	418	688	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele46g0303	692	SUPERFAMILY	Protein kinase-like (PK-like)	400	685	IPR011009	-
	Lele46g0303	692	Pfam	Protein tyrosine and serine/threonine kinase	422	684	IPR001245	GO:0004672\|GO:0006468
	Lele46g0303	692	Gene3D	Transferase(Phosphotransferase) domain 1	497	690	-	-
	Lele46g0303	692	Pfam	Leucine rich repeat	169	228	IPR001611	GO:0005515
	Lele46g0303	692	FunFam	Protein NSP-INTERACTING KINASE 2	388	496	-	-
	Lele46g0303	692	Gene3D	Ribonuclease Inhibitor	29	140	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele46g0303	Lele-ChrLele46	2015865	2018706	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele46g0303	9	533	Miscellaneous Gene Families	AT4G22730	53.019	0.0	535

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IV	Lele46g0303		PK_Tyr_Ser-Thr	2.6e-34	CL0016