Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0281 ATGGCTTCGTTTTCTCCTGCTCGCTCTTCGGCAGCTCACTGCCTTGATCCCTTCTTGGAAGCAGCGGGAGAATTCTCTCCCCTTCCTTCTCTCTTTTCGGGTCTGCTTCTGACCAAGATGGGCTTTCGGACAAGAAGGCGAAGAAGAAGGAGACCAAGAAGCGTAAATATTCGGATAGTGATGGGGTTGGAGAGAAGAGAGAGTAGGTCGGAGTTAGTTGAGCCCGAAAGTTCGAGGGCGAAGAGTCAGGAGAAGAGAAACAAGAATAAAAAGCCGAAATTCGAGGAACCTGACATGGGAGGGGAAGAGCTCGAGAAGAAGAAGAAGGATCCCAATGCAACTTCGAACTTTCGGATATCGGAGCCCTTGCGGGCGAAGTTGAAGGAGAAAGGGATTGAATCTCTGTTTCCCATTCAGGCCATGACTTTTGATACCATTCTAGATGGTTCTGATTTGGTCGGTCGGGCTCGCACTGGTCAGGGTAAAACGTTGGCTTTTGTGTTGCCCATACTAGAGTCTTTAACCAATGGTCCTGCTAAAGAATCCAAAAAAACTGCCTATGGGAGATCTCCAAGCGTTCTTGTGCTCTTGCCTACTAGAGAATTGGCCTCTCAGGTGTTCTCTGACTTTGAAGTTTATGGCGAGGCATTGGGTTTGGTTTCTTGCTGTTTGTATGGTGGAGCTCCATATCAAGCGCAAGAAATTAAGCTCAAGCGAGGTGTTGATATTGCTGTTGGAACACCAGGCCGCATAAAGGATCATATAGAGAGGCAAAATATTAACCTAACCCAACTAAGGTTCCGTGTCCTTGATGAGGCAGATGAGATGCTGAAGATGGGTTTTGTTGAAGATGTTGAATTCATTCTGGTTAAGAAAACTGTTGATCTCGTTGGGAATGAAAAAATGAAGGCTAGCACCAATGTTAGGCATATTGTTCTTCCATGTACGAGTTCTGCCAGGTCCCAGCTTATCCCAGACATTATTCGCTCCTATAGCAGTGGAGGCCGAACAATCATATTTACTGAGACAAAGGAGTCAGCTTCTGAGCTTGCAGGGCTTTTGCCTGGAGCTCGAGCTCTACATGGTGACATACAACAAACACAACGCGAGTGTGAACCACCACGTGATGTAGAAGCCTATATTCATCGTTCTGGCCGCACAGGACGGGCAGGCAACACTGGAGTTGCAGTTATGCTTTATGATCCAAGACGGTCAAATATATCTAAAATAGAAAGAGATTCAGGGGTGAAATTTGAACACATATCAGCTCCTCAGCCTGCTGATATTGCAAAAGCTGTTGGTGGGGATGCTGCTGAAATGATTAACCAAGTTGTTATACCTGCATTCAAGTCTGTTGCTGAGGAGCTTTTGAAAAACTCTGGTTTAACAGCCGTTGAATTACTTGCAAAAGCTCTTGCCAAGGCTGTTGGTTATACTGAGATAAAGAAAAGATCACTTCTTACTTCCATGGAGAATTATGTCACATTACTTCTTGAGATTGGAAGACCCATCTACACCCCATCTTTTGCATATGGAGTCCTCAGGGGATTTCTGCCTGAGGAGAAGGTTATGGCAGTGAAGGGTCTTACTCTGACTGCAGATGGAAATGGCTCTGTCTTTGATGTGCCAGCTGAAGATTTAGATACATATGTTGCTGGTCAGGAAAATGCTGCTAATATAAGCTTAGAAGTATTAGAGGTATTGCCACGTTTGCAAGAAAGAGACCAATCAAGAGGGGGCAGATTTGATGGCGGCAGCGGTCATGGTGGGTTTGGTAATAATAGAGGTAGTGGCCGTGGAAACAGATTTTCTGGCGGGAGAGGCGGTGGCCAAAATGGTGGTTTCTCGAATCAGAGGAATGGTCAGTTTTCCGGTGGTTCTAATGGCGGGAGAGGCGGTGGTGGTAGTGGCAACAGAGGGGGAAAGAGATGGTGA 1935 0.4615 MASFSPARSSAAHCLDPFLEAAGEFSPLPSLFSGLLLTKMGFRTRRRRRRRPRSVNIRIVMGLERRESRSELVEPESSRAKSQEKRNKNKKPKFEEPDMGGEELEKKKKDPNATSNFRISEPLRAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKESKKTAYGRSPSVLVLLPTRELASQVFSDFEVYGEALGLVSCCLYGGAPYQAQEIKLKRGVDIAVGTPGRIKDHIERQNINLTQLRFRVLDEADEMLKMGFVEDVEFILVKKTVDLVGNEKMKASTNVRHIVLPCTSSARSQLIPDIIRSYSSGGRTIIFTETKESASELAGLLPGARALHGDIQQTQRECEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERDSGVKFEHISAPQPADIAKAVGGDAAEMINQVVIPAFKSVAEELLKNSGLTAVELLAKALAKAVGYTEIKKRSLLTSMENYVTLLLEIGRPIYTPSFAYGVLRGFLPEEKVMAVKGLTLTADGNGSVFDVPAEDLDTYVAGQENAANISLEVLEVLPRLQERDQSRGGRFDGGSGHGGFGNNRGSGRGNRFSGGRGGGQNGGFSNQRNGQFSGGSNGGRGGGGSGNRGGKRW 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0281 644 CDD DEADc 123 289 - -
Lele46g0281 644 MobiDBLite consensus disorder prediction 68 114 - -
Lele46g0281 644 SUPERFAMILY RNA-binding domain, RBD 481 564 IPR035979 GO:0003676
Lele46g0281 644 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 86 403 IPR027417 -
Lele46g0281 644 MobiDBLite consensus disorder prediction 610 631 - -
Lele46g0281 644 Gene3D - 496 566 - -
Lele46g0281 644 FunFam DEAD-box ATP-dependent RNA helicase 7 494 566 - -
Lele46g0281 644 Gene3D - 297 370 IPR027417 -
Lele46g0281 644 CDD GUCT_RH7_like 484 569 - -
Lele46g0281 644 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 372 440 - -
Lele46g0281 644 SMART ultradead3 131 323 IPR014001 -
Lele46g0281 644 MobiDBLite consensus disorder prediction 575 644 - -
Lele46g0281 644 Pfam DEAD/DEAH box helicase 136 289 IPR011545 GO:0003676|GO:0005524
Lele46g0281 644 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 362 IPR014001 -
Lele46g0281 644 Pfam GUCT (NUC152) domain 477 572 IPR012562 GO:0003723|GO:0004386|GO:0005524
Lele46g0281 644 Gene3D - 88 296 IPR027417 -
Lele46g0281 644 Gene3D - 371 495 IPR027417 -
Lele46g0281 644 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 269 277 IPR000629 -
Lele46g0281 644 MobiDBLite consensus disorder prediction 68 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0281 Lele-ChrLele46 1831926 1836165 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0281 119 433 Eukaryotic Initiation Factors Gene Family AT3G19760 24.021 1.35e-18 86.7