Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0226 ATGGTGAGGGGGAAGGTTGAAATGAAGAAGATAGAGAATGCAACTAACCGTCAAGTAACGTTTTCAAAGCGTAGAAACGGGCTTCTGAAGAAAGCCTATGAGCTATCTGTTCTTTGTGACGCCCAAGTAGCTGTGATTATCTTCTCACAAAGAGGCAGACTCTATGAGTTCTCAAGTTCTGACATGAGAAAGAATATGGAACGGTACTGGAAATACAGCAAAGGCGATCAACTGGTCAACAACAATAATGAAGATGAACAATACAACCAGCAAATGAAGGTTGAATGTGAAATCATGGCGAAGAAGATTGAGAATCTTCAAATTTGTCAAAGGAAACTAATGGGAGAAGAGTTGAGTTCATGTTCAATTAAAGAACTTGAAGGAATAGAGAATCAGCTTATCACAAGTTTGCAAAACGTCAGGCTTAGAAAGAGTCAGCTATTCCGAGACCAAATTCTGCAACTACATGACAAGGGAAGATATTTGGTCCAAGAGAACGCCAGCTTAAATAAATTGTGTGGAAGAACACAATCTCAGCAGCAATGGGCAAAGCACAAAGAAGCAGACGTAGAAACAGAATTATGTATTGGACTCCCACAAAATCGATGA 609 0.3974 MVRGKVEMKKIENATNRQVTFSKRRNGLLKKAYELSVLCDAQVAVIIFSQRGRLYEFSSSDMRKNMERYWKYSKGDQLVNNNNEDEQYNQQMKVECEIMAKKIENLQICQRKLMGEELSSCSIKELEGIENQLITSLQNVRLRKSQLFRDQILQLHDKGRYLVQENASLNKLCGRTQSQQQWAKHKEADVETELCIGLPQNR 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0226 202 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lele46g0226 202 SUPERFAMILY SRF-like 3 91 IPR036879 GO:0003677|GO:0046983
Lele46g0226 202 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele46g0226 202 CDD MADS_MEF2_like 3 77 IPR033896 GO:0000977|GO:0045944
Lele46g0226 202 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele46g0226 202 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Lele46g0226 202 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele46g0226 202 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Lele46g0226 202 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele46g0226 202 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele46g0226 202 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele46g0226 202 ProSiteProfiles K-box domain profile. 89 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele46g0226 202 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 169 - -
Lele46g0226 202 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0226 Lele-ChrLele46 1441634 1446125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0226 1 202 MADS-box Gene Family AT5G51860 54.187 2.82e-66 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele46g0226 K-box 6.3e-23 No_clan