Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0209 ATGGTGAGTCAGAGGCAGCGACTTGCTCGGAAAAAATTCAAAGCAGAGCACCCTGAACTGTTCCCAAAGCCAGAGCCGACGCCCCCAAAAGACCCTGACAAGAAGAAGAAGAAGAAACCGAAGATTCCTGGTATGAAGCCTGATGAGACTTGTTTCATCTGCAAAGCTAAAGACCATATTGCTAAGTCCTGTCCCGAAAAAGCTGAGCGGGAAAAGAATAAGATATGTTTACGTTGTCGGCAGCGCGGTCACAGAGTCAAGAATTGCCCTCAGGTGAAAGATGGCGCCAATGATACGAAAATATGCTATAATTGTGGAGAAACTGGACACGCACTTTCAAAATGTCCACAGCCTCTTGAAGATGGGGGAACAAAATTTGCTGATTGCTATGTGTGTAATGGACGTGGGCACTTGAGCAAAAACTGCCCTCAAAATTTCCGTGGTATCTATCCAAAGATATGTGGCGGCGTGACACATTTGGCAAAGGATTGCCCTGACAAAGGGAAAAAAGAGTCTTCTGCTGCTAATTGGTCTATGAATGCTGGAGGGCCAAAAAATCAGGTGACCAAACTTGTGAGCTGGGATGATCTTCAGGATGACTTCATGGCAGATGACGCGAATGCGGCGTCTGGAATGGCTGTGAATGATGAGTGTAAGCTCAAGTTTCAAGAGCTGAAAGCAAAGAGAAACCATCGTTTCATTGTGTTCAAGATTGAAGATCAAGAAATTGTGGTGGACAAAGTTGGAAACCCAAATGCTAATTATGAAGATTTCACTTCATCTCTTCCTTCTAATGAGTGTCGCTATGCTATCTTTGATTTTGATTTCATTACTGATGAGAATTGCCAAAAAAGCAAGATCTTCTTCGTCGCCTGGTCTCCGGATTCATCAAAAGTCAGGCAAAAGATGGTGTATGCGAGCTCAAAGGACAGATTCAAGAGGGAACTAGATGGCATTCAATTTGAATTGCAAGCAACTGATCCCAGCGAAATGAGCTTCGACATCATAAAAGCAAGGGCATATTAA 1026 0.4376 MVSQRQRLARKKFKAEHPELFPKPEPTPPKDPDKKKKKKPKIPGMKPDETCFICKAKDHIAKSCPEKAEREKNKICLRCRQRGHRVKNCPQVKDGANDTKICYNCGETGHALSKCPQPLEDGGTKFADCYVCNGRGHLSKNCPQNFRGIYPKICGGVTHLAKDCPDKGKKESSAANWSMNAGGPKNQVTKLVSWDDLQDDFMADDANAASGMAVNDECKLKFQELKAKRNHRFIVFKIEDQEIVVDKVGNPNANYEDFTSSLPSNECRYAIFDFDFITDENCQKSKIFFVAWSPDSSKVRQKMVYASSKDRFKRELDGIQFELQATDPSEMSFDIIKARAY 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0209 341 SMART c2hcfinal6 75 91 IPR001878 GO:0003676|GO:0008270
Lele46g0209 341 SMART c2hcfinal6 101 117 IPR001878 GO:0003676|GO:0008270
Lele46g0209 341 SMART c2hcfinal6 153 166 IPR001878 GO:0003676|GO:0008270
Lele46g0209 341 SMART c2hcfinal6 128 144 IPR001878 GO:0003676|GO:0008270
Lele46g0209 341 SMART c2hcfinal6 50 66 IPR001878 GO:0003676|GO:0008270
Lele46g0209 341 MobiDBLite consensus disorder prediction 12 33 - -
Lele46g0209 341 ProSiteProfiles Zinc finger CCHC-type profile. 102 117 IPR001878 GO:0003676|GO:0008270
Lele46g0209 341 Gene3D - 124 180 - -
Lele46g0209 341 Gene3D - 73 123 - -
Lele46g0209 341 CDD ADF_cofilin_like 210 340 IPR017904 GO:0015629|GO:0030042
Lele46g0209 341 Gene3D - 29 72 - -
Lele46g0209 341 ProSiteProfiles Zinc finger CCHC-type profile. 129 144 IPR001878 GO:0003676|GO:0008270
Lele46g0209 341 SMART adf_2 216 341 IPR002108 GO:0003779
Lele46g0209 341 PANTHER OS04G0555800 PROTEIN 1 39 - -
Lele46g0209 341 FunFam Actin-depolymerizing factor 2 205 341 - -
Lele46g0209 341 Gene3D Severin 201 341 IPR029006 -
Lele46g0209 341 MobiDBLite consensus disorder prediction 1 44 - -
Lele46g0209 341 SUPERFAMILY Retrovirus zinc finger-like domains 96 145 IPR036875 GO:0003676|GO:0008270
Lele46g0209 341 Pfam Zinc knuckle 129 144 IPR001878 GO:0003676|GO:0008270
Lele46g0209 341 Pfam Zinc knuckle 101 117 IPR001878 GO:0003676|GO:0008270
Lele46g0209 341 SUPERFAMILY Retrovirus zinc finger-like domains 43 92 IPR036875 GO:0003676|GO:0008270
Lele46g0209 341 ProSiteProfiles ADF-H domain profile. 211 341 IPR002108 GO:0003779
Lele46g0209 341 SUPERFAMILY Actin depolymerizing proteins 205 339 - -
Lele46g0209 341 Pfam Cofilin/tropomyosin-type actin-binding protein 218 338 IPR002108 GO:0003779
Lele46g0209 341 ProSiteProfiles Zinc finger CCHC-type profile. 76 91 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0209 Lele-ChrLele46 1305282 1309172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0209 76 142 C2H2 Transcription Factor Family AT5G20220 33.803 3.01e-06 46.6