Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0197 ATGTCAGATTCCGAGGACGAAAATCCCGAACTTACTCCCCAATCAAAGCCCACTGCCGACGAACCTGGCTCTGTAATGGATTTCGACGTCGACCTAGAGAGTTCATGGCCTTTAGATCAGATAGCTTTCGCTTCTAACCCTATGTCCCCTTTTCTGATTTCCGCCACATCGGAGCAACCTTCTTCTCCTCTCTGGCTTTTCTCAGACGTTGACGATGATAGGCAAGCTAAACTTGCCGCTTCAGCCCTCTCCGATGTCCATCGATTTCTCTCATGCAATTCGAATTCAGTAGCTGAAAAACCTGTGGAGAATGAGGAGACGAAAAAAACCCCTTCGCCCTTTGTTGCCCTGCCACCATTACCATTAGAAACTTCAGATGGTTATTGTTTGACTAAAGAAAGGATGACACAAGCACTAAGGTACTTCAAAGAATTGGCTGACCAGAATGTTCTGGCTCAGGTTTGGGCACCTGTAAGGATGGGAAACCAGTATGTCCTTACAACTTCAGGGCAACCCTTCGTTCTTGATCCTCATAGTAATGGACTCTATCAGTATAGAACAGTCTCTCTGATGTACATGTTTTCAGTGAATGGGGAGAATGATGGAATCCTGGGGCTTCCCGGTCGTGTTTTTCAACATAAGTTGCCAGAATGGTCTCCCAATGTTCAATATTATTCTAATAAAGAGTATCCCCGCCGAAATCATGCTCAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCAGAGAAGTCATGTATTGGTGTGCTGGAGTTGATAATGACTTCTCAGAAGATTAACTATGCCCCTGAGGTTGATAAAGTCTGCAAAGCTCTTGAGGCAGTAAATTTGAAGAGTTCAGAAATTTTGGAACATCCGTTCACTCAGATTTGTAATGAAAGCCGTCAGAATGCATTAGCAGAGATATTGGAGATATTGACAGTGGTCTGTGAAACTCATAAATTACCTCTGGCCCAAACATGGGTTCCCTGTAGGCATCGGAGTGTTCTGGCCAATGGTGGTGGCCTGAAGAAGTGCTGCTCGAGCTTCGATGGTAGTTGCATGGGACAAGTTTGCATGTCTACTACTGATGTTGCATTCTATGTCATAGATGCTCATATGTGGGGTTTCCATGAAGCCTGTGCTGAGCATCACCTACAACAAGGTCAAGGGGTTGCTGGGAAGGCATTTTTGTCCGGCAATTTGTGCTTCTGTGGGAACATTACCCGATTCTGCAAAACTGAGTATCCTTTGGTACATTATGCTCTCATGTTTGGCTTAACCAGCTGTTTTGCTGTCTGTTTGCAAAGCTCTCATACAGGACTTGATGATTATATACTGGAGTTTTTTCTGCCTCCTAAGGTCGCAGACTTAAACGAACAAAAGACTATGTTAGGATCTATATTAGCAACAATGAAACAGCATTTCCATAGTCTTAAGATAGCTGCTGGTGTTGAACTCGAGGAGGAATGTTCAGTTGAAATCATTGATGCAACAAGTGAAAGAGTTTATTCAAGACTCAAATCTATTATGATTACCCAACCTACTAAATTGCCACATGGATCTGATCCCTTGCCAAATATGGGGGAGATTTTAGCACTGGAAACATCAGAGCAGCAAATGGTATTCTTAGACGATATAAATGGCAGTGGGAGTCTCGATGATAGAGCTGGAGAAACCTCTGATCAGATATCCCCCTTGGAGACTAAAAACATAAAGAAACCCTCGGAGAGAAAACGGGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTTTGCAAAACTATTTTGCTGGTAGTCTTAAAGATGCTGCAAAGAGTCTTGGTGTTTGCCCCACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCCCGTTGGCCATCTCGGAAGATTAACAAGGTTAATCGTTCCCTGTCCAAGCTCAAGCGGGTCATTGAATCCGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAGTACCAGTACATTTCCCATGGCTGTTGGTTCCTTTCCTGAGACTTCAAACAAGTTCAACCAACAAGCCTCGCTAAGCACTCAACTGGCAGAACCACTAATGAAAGAGAGCGAGTTGGATGCCTCCAAAGTATCAGATTCAAACAGGCAAACTAAGGTGGAACATCAGTTGGTAGGAGGAAGGGTACAAAGTCCTGAGAAAAGTGGGTCCAGTCATGAGTTTGGTAAATGCCCTAAAGGACCTAGAACGGGGAGTGCCTCAAGCGAAGATAGGGCAAACCCTACTTCTCATGGTTCGTGTCATGGTAGTCCCCCAACCGAAAGTTCACCTCCAAAAGATATTTTCATTACAACCAATACTGATCAGTATGTTGTGGCTGGGGGATCGCCGGAGTTGCCGCCAACAAGTAAACTGAACAGTCCGCCTGGGTATGCCATGCCCAACCTTGTGCCCACAGAACTTCAGGAGTCATTTGGGGGAATGCTGATAGAGGATGCAGGTAGTTCCAAAGACTTGAGAAATTTGTGTCCTGCAGTAGCAGATGCCAATGTGGAGGATCAGTTACCAGAAGCTTGTACTGCTAATCCTCCTCTCTCAGACTTGGGTCCTAAGCAATGCACCAATACGCTTGGTGACACGATGATGCCTTTCGCAGCTCGGAGAGAAATGAAGACCGTGACTATAAAAGCAACATACAGAGAAGATATCATACGGTTTCGAATCTCCTTAACCTCGAGCATCGCGGAGCTGAAAGAAGAAGTAGCCAAAAGACTGAAACTAGAGGTGGGTACTTTTGATATCAAGTACCTGGATGATGATCAAGAATGGGTTTTGATAGTCTGTGATGCAGACCTTCAGGAGTGCATGGATATCTCTAGATCATCCGGTACTAACATAATCAGGCTTTTGGTGCATGATATAACGTCCAATCTCGGAAGTTCCTGTGAGAGCTCAGGGGAGTGA 2955 0.4464 MSDSEDENPELTPQSKPTADEPGSVMDFDVDLESSWPLDQIAFASNPMSPFLISATSEQPSSPLWLFSDVDDDRQAKLAASALSDVHRFLSCNSNSVAEKPVENEETKKTPSPFVALPPLPLETSDGYCLTKERMTQALRYFKELADQNVLAQVWAPVRMGNQYVLTTSGQPFVLDPHSNGLYQYRTVSLMYMFSVNGENDGILGLPGRVFQHKLPEWSPNVQYYSNKEYPRRNHAQHYNVRGTLALPVFEPSEKSCIGVLELIMTSQKINYAPEVDKVCKALEAVNLKSSEILEHPFTQICNESRQNALAEILEILTVVCETHKLPLAQTWVPCRHRSVLANGGGLKKCCSSFDGSCMGQVCMSTTDVAFYVIDAHMWGFHEACAEHHLQQGQGVAGKAFLSGNLCFCGNITRFCKTEYPLVHYALMFGLTSCFAVCLQSSHTGLDDYILEFFLPPKVADLNEQKTMLGSILATMKQHFHSLKIAAGVELEEECSVEIIDATSERVYSRLKSIMITQPTKLPHGSDPLPNMGEILALETSEQQMVFLDDINGSGSLDDRAGETSDQISPLETKNIKKPSERKRGKTEKSISLEVLQNYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKRVIESVQGAEGAFGLNSLSTSTFPMAVGSFPETSNKFNQQASLSTQLAEPLMKESELDASKVSDSNRQTKVEHQLVGGRVQSPEKSGSSHEFGKCPKGPRTGSASSEDRANPTSHGSCHGSPPTESSPPKDIFITTNTDQYVVAGGSPELPPTSKLNSPPGYAMPNLVPTELQESFGGMLIEDAGSSKDLRNLCPAVADANVEDQLPEACTANPPLSDLGPKQCTNTLGDTMMPFAARREMKTVTIKATYREDIIRFRISLTSSIAELKEEVAKRLKLEVGTFDIKYLDDDQEWVLIVCDADLQECMDISRSSGTNIIRLLVHDITSNLGSSCESSGE 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0197 984 MobiDBLite consensus disorder prediction 700 714 - -
Lele46g0197 984 CDD PB1_NLP 890 970 IPR034891 -
Lele46g0197 984 Pfam PB1 domain 889 970 IPR000270 GO:0005515
Lele46g0197 984 PANTHER PROTEIN NLP8 57 983 IPR045012 GO:0003700
Lele46g0197 984 MobiDBLite consensus disorder prediction 558 574 - -
Lele46g0197 984 ProSiteProfiles PB1 domain profile. 889 971 IPR000270 GO:0005515
Lele46g0197 984 FunFam RWP-RK domain-containing protein 886 970 - -
Lele46g0197 984 SMART PB1_new 889 971 IPR000270 GO:0005515
Lele46g0197 984 MobiDBLite consensus disorder prediction 1 27 - -
Lele46g0197 984 ProSiteProfiles RWP-RK domain profile. 577 658 IPR003035 -
Lele46g0197 984 Pfam RWP-RK domain 590 638 IPR003035 -
Lele46g0197 984 MobiDBLite consensus disorder prediction 750 778 - -
Lele46g0197 984 MobiDBLite consensus disorder prediction 698 778 - -
Lele46g0197 984 Gene3D - 886 970 - -
Lele46g0197 984 SUPERFAMILY CAD & PB1 domains 887 974 - -
Lele46g0197 984 MobiDBLite consensus disorder prediction 558 588 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0197 Lele-ChrLele46 1187196 1191513 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0197 265 984 NLP Transcription Factor Family AT4G24020 55.281 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lele46g0197 PB1 1.4e-20 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g0197 46 1187196 1191513 Lele48g1266 48 17036077 17040383 hybridization