Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0174 ATGGATCCTAATGGTTATGTGGATGATAAAAGTGAAAGTAGACTGTATATCGGGAACCTTGATCTTAGAATAACAGAAGCTGCTCTTATAAAAATGTTTTCTCCATATGGGAAGATTGTATCTGAGGATTTCTTATGGCACACTCGTGGCCCTAAGCGTGGAGAGCCACGTGGCTTTGCTTTTATCCAGTATAGCTCGAAAGAGGAAGCGGAACTGGCCAAGGAGAAAATGCATGGGAAGTTAGCCTGTGGCCGGCCGTTGGTTGTTCGGCTCGCCAGCGAGAAGTGCCTGATAGAAACAGCCAATAACTCATCAAAAGTCATGAGAGAAGGGCACAATATACACCTTACTGGTAATGGCACGGGACAGACAAGTCGTAGTGCAAAAATAGCTGCAATAAAGAACAAATTGAAATCAATAGAGGAGGAGAGCTCTAGGCCAAAGAAGCAGTAG 453 0.4437 MDPNGYVDDKSESRLYIGNLDLRITEAALIKMFSPYGKIVSEDFLWHTRGPKRGEPRGFAFIQYSSKEEAELAKEKMHGKLACGRPLVVRLASEKCLIETANNSSKVMREGHNIHLTGNGTGQTSRSAKIAAIKNKLKSIEEESSRPKKQ 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0174 150 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Lele46g0174 150 SUPERFAMILY RNA-binding domain, RBD 5 99 IPR035979 GO:0003676
Lele46g0174 150 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Lele46g0174 150 Gene3D - 10 108 IPR012677 -
Lele46g0174 150 SMART rrm1_1 14 90 IPR000504 GO:0003723
Lele46g0174 150 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 142 - -
Lele46g0174 150 CDD RRM_RBM18 14 93 IPR039157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0174 Lele-ChrLele46 1045013 1046196 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0174 13 95 Eukaryotic Initiation Factors Gene Family AT1G71770 40.964 8.72e-13 62.8